PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa08g017220.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | C2H2 | ||||||||
Protein Properties | Length: 369aa MW: 41667.8 Da PI: 8.4242 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 23.2 | 1.7e-07 | 212 | 234 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++Cgk F+r nL+ H+r H Csa08g017220.1 212 HYCQICGKGFKRDANLRMHMRAH 234 68*******************99 PP | |||||||
2 | zf-C2H2 | 11.8 | 0.00073 | 333 | 348 | 6 | 21 |
TTEEESSHHHHHHHHH CS zf-C2H2 6 CgksFsrksnLkrHir 21 Cg+ Fsrk+ L++H + Csa08g017220.1 333 CGTKFSRKDKLMSHVS 348 **************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.78E-6 | 210 | 237 | No hit | No description |
SMART | SM00355 | 0.0028 | 212 | 234 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 3.8E-6 | 212 | 236 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 12.632 | 212 | 239 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 214 | 234 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 160 | 263 | 296 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 73 | 301 | 323 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 369 aa Download sequence Send to blast |
MTNQDERITN NGEGSMSSFS GTTTSSSKQI YLNTVTAAGT KSLEEDDVSL SLLYNLSTLQ 60 DKVHQIQPLV SFYMISTNHI NQSSGSTSLA VANIGSLVQE IITAASSMLF ACQQLHNGSN 120 NDNDIHNDQT ADAMVLDFSR QETDPGRDFV QESTNLFGVQ ERGQISFPDQ NHNWYGTETI 180 NPKREHHHSK PRPGNYEILE LDVADLLAKY THYCQICGKG FKRDANLRMH MRAHGDEYKT 240 REALISSTSQ DKKGEYSLKK HYYSCPQQGC RWNQRHEKFQ PLKSVICAKN HYKRSHCPKM 300 YMCRRCSVKH FSVLSDLRTH EKHCGNIKWV CSCGTKFSRK DKLMSHVSLF LGHVPAHGSS 360 QPPTITLR* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa08g017220.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB005243 | 0.0 | AB005243.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MRN17. | |||
GenBank | AK227740 | 0.0 | AK227740.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-31-P16. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010421089.1 | 0.0 | PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like | ||||
Swissprot | Q0WT24 | 0.0 | STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2 | ||||
TrEMBL | D7M1K6 | 0.0 | D7M1K6_ARALL; Zinc finger family protein | ||||
STRING | XP_010421089.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5752 | 25 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22890.1 | 0.0 | C2H2 family protein |