 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Csa08g017220.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
| Family |
C2H2 |
| Protein Properties |
Length: 369aa MW: 41667.8 Da PI: 8.4242 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Csa08g017220.1 | genome | CSGP | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 23.2 | 1.7e-07 | 212 | 234 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+ C++Cgk F+r nL+ H+r H
Csa08g017220.1 212 HYCQICGKGFKRDANLRMHMRAH 234
68*******************99 PP
|
| 2 | zf-C2H2 | 11.8 | 0.00073 | 333 | 348 | 6 | 21 |
TTEEESSHHHHHHHHH CS
zf-C2H2 6 CgksFsrksnLkrHir 21
Cg+ Fsrk+ L++H +
Csa08g017220.1 333 CGTKFSRKDKLMSHVS 348
**************86 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 369 aa
Download sequence Send
to blast |
MTNQDERITN NGEGSMSSFS GTTTSSSKQI YLNTVTAAGT KSLEEDDVSL SLLYNLSTLQ 60
DKVHQIQPLV SFYMISTNHI NQSSGSTSLA VANIGSLVQE IITAASSMLF ACQQLHNGSN 120
NDNDIHNDQT ADAMVLDFSR QETDPGRDFV QESTNLFGVQ ERGQISFPDQ NHNWYGTETI 180
NPKREHHHSK PRPGNYEILE LDVADLLAKY THYCQICGKG FKRDANLRMH MRAHGDEYKT 240
REALISSTSQ DKKGEYSLKK HYYSCPQQGC RWNQRHEKFQ PLKSVICAKN HYKRSHCPKM 300
YMCRRCSVKH FSVLSDLRTH EKHCGNIKWV CSCGTKFSRK DKLMSHVSLF LGHVPAHGSS 360
QPPTITLR*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AB005243 | 0.0 | AB005243.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MRN17. |
| GenBank | AK227740 | 0.0 | AK227740.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-31-P16. |
| GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
