PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

ERF

Protein Properties

Length: 301aa MW: 33273 Da PI: 7.4503

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa08g010930.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	59	1.1e-18	33	83	2	56
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 ++GVr++ +g+WvAeIr+p + r +r +lg+f t eAa a+++a+kkl+g+ Csa08g010930.1 33 TFRGVRQRT-WGKWVAEIREP---N-RgTRLWLGTFNTSVEAAMAYDEAAKKLYGH 83 69**999.******8...3.35***********************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	7.67E-28	32	88	No hit	No description
SMART	SM00380	1.4E-33	33	96	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	6.08E-20	33	89	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	1.4E-28	33	89	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	20.31	33	90	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.5E-9	34	45	IPR001471	AP2/ERF domain
Pfam	PF00847	8.2E-14	34	83	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.5E-9	56	72	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MEEEQPPAKK RNMGRSRKGC MKGKGGPENA TCTFRGVRQR TWGKWVAEIR EPNRGTRLWL 60 GTFNTSVEAA MAYDEAAKKL YGHEAKLNLL HPQQQQQQVV NRNLSFSGHG SGSWSHKLDT 120 VCGLDLGLGP ASGPRGSWSG RSSFLQEDDD HNNNRCVPSS GSSLCWLLPK QSNSQDQESV 180 NAASGGSGSS LTFSTRLKPR NMVNPNYGLS NGAWSRFLVG QEKKTEHEVS SSCGSTDNKE 240 SMSVPSCGVE RLHRPEMEQG TGYLEMDDLL EIDDLGLLIG KNGDFKNWCC DEFQHPWNWF 300 *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	5e-15	34	89	3	59	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. {ECO:0000250, ECO:0000269\|PubMed:11798174}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00519	DAP	Transfer from AT5G18450	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa08g010930.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC051626	0.0	AC051626.5 Genomic Sequence For Arabidopsis thaliana Clone F20L16 From Chromosome V, complete sequence.
GenBank	AY560853	0.0	AY560853.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g18450) mRNA, complete cds.
GenBank	BT026074	0.0	BT026074.1 Arabidopsis thaliana At5g18450 mRNA, complete cds.
GenBank	CP002688	0.0	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010420608.1	0.0	PREDICTED: dehydration-responsive element-binding protein 2G-like
Swissprot	P61827	0.0	DRE2G_ARATH; Dehydration-responsive element-binding protein 2G
TrEMBL	A0A178UDI4	0.0	A0A178UDI4_ARATH; Uncharacterized protein
STRING	XP_010420608.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9978	20	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18450.1	1e-152	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]