PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa08g009620.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | AP2 | ||||||||
Protein Properties | Length: 578aa MW: 63217 Da PI: 6.5899 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 36.5 | 1.2e-11 | 210 | 266 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ngkr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++ g++ k + g ++ +e+Aa+a++ a++k++g Csa08g009620.2 210 SIYRGVTRHRWTGRYEAHLWDnSCKrEGQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 266 57*******************88885445536655.779999**************98 PP | |||||||
2 | AP2 | 51.2 | 3.2e-16 | 309 | 360 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+fgt eeAa+a++ a+ k++g Csa08g009620.2 309 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFGTQEEAAEAYDIAAIKFRG 360 57****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 9.7E-9 | 210 | 266 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-15 | 210 | 276 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 9.82E-19 | 210 | 276 | No hit | No description |
SMART | SM00380 | 6.2E-23 | 211 | 280 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.319 | 211 | 274 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.7E-12 | 211 | 275 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-6 | 212 | 223 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.0E-11 | 309 | 360 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.39E-24 | 309 | 370 | No hit | No description |
SuperFamily | SSF54171 | 1.37E-17 | 309 | 370 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 18.742 | 310 | 368 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.0E-33 | 310 | 374 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-17 | 310 | 369 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-6 | 350 | 370 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 578 aa Download sequence Send to blast |
MNSMNNWLGF SLSPHDQNHH HTDLDSSPTT TAVDVAGEYC FDLAAAASDG SSAVQTSFAS 60 PFGVVLEAFT RDNNSHSRDW DINSGACNTI HNNEPNGPKL ENFLGRNSTI YNTNENVGDG 120 SGGCGGDGGG GGSLGLSMIK TWLSNQPVAN GNHQDNRNGA RGLSLSMNSS TTCDSNNNNN 180 NNDVVQEKTI VDVVEATPKK TIESFGQRTS IYRGVTRHRW TGRYEAHLWD NSCKREGQTR 240 KGRQGGYDKE EKAARAYDLA ALKYWGTTTT TNFPMSSYEK EVEEMKHMTR QEYVASLRRK 300 SSGFSRGASI YRGVTRHHQH GRWQARIGRV AGNKDLYLGT FGTQEEAAEA YDIAAIKFRG 360 LSAVTNFDMS RYNVKAILES PSLPIGSSAK RLKEVNSPVP SMMISNNVSE SASNVGGWQN 420 AAFQHHQGMD LSVLPQQQER YVGYYNGGNL SSESTRVCSK QEEEQQRFLS NSIDHHSSTS 480 DDSVTVCGNV VGYGGYQGFA IPVGTSVNCD AFTAAEIAYN ARNHYYYAQR QQQQQIHQQI 540 PEGDFPVAIS NNVGSNMYYH GECGGEGASM FTVWNGT* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa08g009620.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY585684 | 0.0 | AY585684.1 Arabidopsis thaliana clone at5g17430 AP2/EREBP transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010420464.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor BBM | ||||
Swissprot | Q6PQQ4 | 0.0 | BBM_ARATH; AP2-like ethylene-responsive transcription factor BBM | ||||
TrEMBL | D7LX05 | 0.0 | D7LX05_ARALL; Predicted protein | ||||
STRING | XP_010420463.1 | 0.0 | (Camelina sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17430.1 | 0.0 | AP2 family protein |