PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g007940.2
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MIKC_MADS
Protein Properties Length: 290aa    MW: 32776.4 Da    PI: 8.6128
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g007940.2genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.41.4e-31959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
  Csa08g007940.2  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59
                    79***********************************************96 PP
2SRF-TF63.13.2e-2062961751
                    HHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF 17 rngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    +ng+lKKA+ELSvLCdaeva+iifs++gklye++s
  Csa08g007940.2 62 KNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 96
                    89*******************************96 PP
3K-box96.44.6e-32115210499
           K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                      + +++ +++ e++++e+ kLk ++e+Lqr+qR+llGedL++L+ keL+qLe+qL+ slk++Rs K++++l+q+++lq+ke++l e+n+aL +kl
  Csa08g007940.2 115 IEVNNKPAKELENSYREYLKLKGRYESLQRQQRNLLGEDLGPLNSKELEQLERQLDGSLKQVRSIKTQYMLDQLSDLQNKEQMLLETNRALAMKL 209
                     56667788999*********************************************************************************998 PP

           K-box  99 e 99 
                     +
  Csa08g007940.2 210 D 210
                     7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.207161IPR002100Transcription factor, MADS-box
SMARTSM004321.3E-41160IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.4E-29261IPR002100Transcription factor, MADS-box
CDDcd002651.14E-39268No hitNo description
PRINTSPR004041.3E-32323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.0E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-323859IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-2062116IPR002100Transcription factor, MADS-box
SMARTSM004325.4E-116297IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.4046298IPR002100Transcription factor, MADS-box
PfamPF003192.0E-156294IPR002100Transcription factor, MADS-box
PfamPF014861.7E-25122209IPR002487Transcription factor, K-box
PROSITE profilePS5129714.811125215IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS  60
PKNGLLKKAY ELSVLCDAEV ALIIFSNRGK LYEFCSSPNM LKTLDRYQKC SYGSIEVNNK  120
PAKELENSYR EYLKLKGRYE SLQRQQRNLL GEDLGPLNSK ELEQLERQLD GSLKQVRSIK  180
TQYMLDQLSD LQNKEQMLLE TNRALAMKLD DMIGVRSHHM GGGGGGWDGG EQNVTYAHHQ  240
AHSQGLYQPL ECNPTLQIGY DNPVCSEQIT ATTQAQAQQG NGYIPGWML*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A2e-341122111103Developmental protein SEPALLATA 3
4ox0_B2e-341122111103Developmental protein SEPALLATA 3
4ox0_C2e-341122111103Developmental protein SEPALLATA 3
4ox0_D2e-341122111103Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Functions with SEPALLATA2/AGL4 and SEPALLATA3/AGL9 to ensure proper development of petals, stamens and carpels, and to prevent the indeterminate growth of the flower meristem. Forms a heterodimer via the K-box domain with AGAMOUS, that could be involved in genes regulation during floral meristem development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa08g007940.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1186080.0AK118608.1 Arabidopsis thaliana At5g15800 mRNA for putative transcription factor (AGL2), complete cds, clone: RAFL19-86-A21.
GenBankBT0062240.0BT006224.1 Arabidopsis thaliana At5g15800 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006400104.11e-167developmental protein SEPALLATA 1
SwissprotP293821e-156SEP1_ARATH; Developmental protein SEPALLATA 1
TrEMBLA0A178UQB31e-168A0A178UQB3_ARATH; SEP1
TrEMBLQ5XXN71e-168Q5XXN7_ARATH; SEPALLATA1
STRINGXP_006400104.11e-166(Eutrema salsugineum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15800.11e-158MIKC_MADS family protein