PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

ERF

Protein Properties

Length: 212aa MW: 23506.8 Da PI: 5.0059

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa08g005890.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	61.2	2.3e-19	18	67	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +gr++AeIrdp++ + r++lg+f+taeeAa a+++a+++++g Csa08g005890.1 18 RFLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAEEAALAYDRAARSMRG 67 678****.******965...5***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	3.05E-31	17	74	No hit	No description
SMART	SM00380	7.1E-34	18	81	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	20.745	18	75	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.88E-21	19	76	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	5.2E-29	19	75	IPR001471	AP2/ERF domain
Pfam	PF00847	3.7E-12	19	67	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.3E-8	19	30	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.3E-8	41	57	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
MNTTSSKSKK KQEEAGTRFL GVRRRPWGRY AAEIRDPTTK ERHWLGTFDT AEEAALAYDR 60 AARSMRGTRA RTNFVYSDMP PSSSVTSIVS PDDPPPPPPP PPAPPSDDPV DYMMIFNQYS 120 STDSPMLQPH CDQVDSYVFG GSHSSTSYCY SNDSSNELPP LPSDLSNSCY SQPQWTWSGD 180 DYSAEYVHSP MFSRMPPVSD SLPQGFNHFG S*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	2e-20	16	74	3	62	ATERF1
3gcc_A	2e-20	16	74	3	62	ATERF1
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Functional Description ? help Back to Top
Source	Description
UniProt	Cell division-promoting factor involved in leaf blade differentiation, inflorescence branching, as well as in carpel and silique shape. Promotes the number of xylem cells. Regulates positively the gibberellin signaling pathway leading to germination, hypocotyl elongation, and leaf expansion. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269\|PubMed:11044410, ECO:0000269\|PubMed:12472696, ECO:0000269\|PubMed:16339853}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa08g005890.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By imbibition. {ECO:0000269\|PubMed:16339853}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB005230	0.0	AB005230.2 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MAC12.
GenBank	AY560852	0.0	AY560852.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g13910) mRNA, complete cds.
GenBank	BT024919	0.0	BT024919.1 Arabidopsis thaliana At5g13910 mRNA, complete cds.
GenBank	CP002688	0.0	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010420002.1	1e-154	PREDICTED: ethylene-responsive transcription factor LEP-like
Swissprot	Q9M644	1e-128	LEP_ARATH; Ethylene-responsive transcription factor LEP
TrEMBL	R0HAG6	1e-129	R0HAG6_9BRAS; Uncharacterized protein
STRING	XP_010420002.1	1e-154	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10	28	1650

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13910.1	2e-91	ERF family protein

Publications ? help Back to Top
van der Graaff E,Nussbaumer C,Keller B The Arabidopsis thaliana rlp mutations revert the ectopic leaf blade formation conferred by activation tagging of the LEP gene. Mol. Genet. Genomics, 2003. 270(3): p. 243-52 [PMID:12910411] Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Chandler JW Class VIIIb APETALA2 Ethylene Response Factors in Plant Development. Trends Plant Sci., 2018. 23(2): p. 151-162 [PMID:29074232]