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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa08g005770.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | C3H | ||||||||
Protein Properties | Length: 99aa MW: 11048.4 Da PI: 7.3621 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.3 | 5.3e-08 | 47 | 67 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C f+++ G+C yG+rC++ H+ Csa08g005770.1 47 VCTFYQK-GICFYGSRCRYDHV 67 6******.*************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 9.357 | 14 | 41 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.85E-6 | 18 | 39 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.1 | 19 | 40 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.267 | 42 | 69 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0021 | 43 | 68 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.05E-5 | 44 | 66 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.6E-4 | 47 | 66 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-5 | 47 | 67 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 99 aa Download sequence Send to blast |
MVCGGSALFF LSAQSPYVLR QFFVHGSCLK GENCEFYHDS KDPPNNVCTF YQKGICFYGS 60 RCRYDHVRAS SNAHRPPLTS DSESLDRSLC CESFHPVP* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | E3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa08g005770.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010419987.1 | 7e-68 | PREDICTED: E3 ubiquitin-protein ligase makorin isoform X2 | ||||
Swissprot | Q6IDS6 | 5e-34 | C3H35_ARATH; E3 ubiquitin-protein ligase makorin | ||||
TrEMBL | R0G650 | 2e-34 | R0G650_9BRAS; Uncharacterized protein | ||||
STRING | XP_010461709.1 | 2e-38 | (Camelina sativa) | ||||
STRING | XP_010486388.1 | 2e-38 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2944 | 27 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08505.2 | 2e-36 | C3H family protein |