PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g002210.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family TALE
Protein Properties Length: 396aa    MW: 44332.1 Da    PI: 6.4204
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g002210.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.41e-073353672254
                     SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      +yp++e++++L +++gL+ +q+ +WF N+R +
  Csa08g002210.1 335 WPYPTEEDKARLVQETGLQLKQINNWFINQRKR 367
                     69*****************************87 PP
2ELK28.92.5e-10288309122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     ELKh+L+++Y+++++++++E++
  Csa08g002210.1 288 ELKHELKQGYKEKIVDIREEIL 309
                     9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.6E-18123167IPR005540KNOX1
PfamPF037901.5E-16126166IPR005540KNOX1
SMARTSM012562.6E-28179234IPR005541KNOX2
PfamPF037918.7E-21183233IPR005541KNOX2
PfamPF037899.0E-7288309IPR005539ELK domain
SMARTSM011886.1E-4288309IPR005539ELK domain
PROSITE profilePS512139.969288308IPR005539ELK domain
PROSITE profilePS5007111.758308371IPR001356Homeobox domain
SMARTSM003895.2E-11310375IPR001356Homeobox domain
SuperFamilySSF466895.13E-16310374IPR009057Homeodomain-like
CDDcd000863.34E-11311372No hitNo description
Gene3DG3DSA:1.10.10.604.5E-25315372IPR009057Homeodomain-like
PfamPF059201.1E-17328367IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MAFHNNHFNH FTDQQQQHHQ PPPPPPPQQQ HFHESAPPNW LLRSDNNFLN LQTAASAAAT  60
SSDSPSSAAA NQWLSRSSSF LQRGGTGANN NAPGSGDVVE DVTTGGEESM IGEKKEAERW  120
QNAKHKAEVL SHPLYEQLLS AHVACLRIAT PVDQLPRIDA QLAQSQNVVA KYSTLDTAQG  180
LLPGDDKELD HFMTHYVLLL CSFKEQLQQH VRVHAMEAVM ACWEIEQSLQ SFTGVSPGEG  240
TGATMSEDED EQVESDAHLF DGSLDGLGFG PLVPTESERS LMERVRQELK HELKQGYKEK  300
IVDIREEILR KRRAGKLPGD TTSVLKSWWQ SHSKWPYPTE EDKARLVQET GLQLKQINNW  360
FINQRKRNWH SNPSSSTVSK NKRRSNAGEN SGRER*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A7e-13311375872Homeobox protein PKNOX1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa08g002210.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankX923930.0X92393.1 A.thaliana mRNA for KNAT4 homeobox protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010419661.10.0PREDICTED: homeobox protein knotted-1-like 4 isoform X1
SwissprotP480010.0KNAT4_ARATH; Homeobox protein knotted-1-like 4
TrEMBLR0HAZ40.0R0HAZ4_9BRAS; Uncharacterized protein
STRINGXP_010419661.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44428158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11060.10.0KNOTTED1-like homeobox gene 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]