PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g002200.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 437aa    MW: 49358.2 Da    PI: 7.9651
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g002200.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.75.4e-18114160148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+eEd +l+++vkq+G + W+ I++++  gR +kqc++rw+++l
   Csa08g002200.1 114 KGQWTAEEDRKLIKLVKQHGDRKWAIISEKLE-GRAGKQCRERWHNHL 160
                      799*****************************.*************97 PP
2Myb_DNA-binding543.9e-17166208145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +++W++eE+  +v+a+++ G++ W+ Ia+ ++ gRt++++k++w+
   Csa08g002200.1 166 KDSWSEEEERVFVEAHTRIGNK-WAEIAKLIQ-GRTENSIKNHWN 208
                      679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129429.224109164IPR017930Myb domain
SuperFamilySSF466892.08E-28111207IPR009057Homeodomain-like
SMARTSM007172.9E-16113162IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-26115167IPR009057Homeodomain-like
PfamPF139213.0E-19117174No hitNo description
CDDcd001671.45E-14117160No hitNo description
PROSITE profilePS5129418.914165215IPR017930Myb domain
SMARTSM007171.2E-13165213IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.1E-19168213IPR009057Homeodomain-like
CDDcd001679.22E-10168211No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051302Biological Processregulation of cell division
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MEDQIIQEKS LAHCAAPPLT AVERFLNSQK NGTLCFKTQE RSIDRPIFKT ARAIETRKNN  60
KENMMMFGPR KGKNLAVNSG NRNVIGEMIV KGATTRDYQK STTCKKRPYK NLIKGQWTAE  120
EDRKLIKLVK QHGDRKWAII SEKLEGRAGK QCRERWHNHL RPDIKKDSWS EEEERVFVEA  180
HTRIGNKWAE IAKLIQGRTE NSIKNHWNAT KRRQNSKRKH KRTRNVDSNS SDIDDLSPSA  240
KRPCILEDYI KSIENNDKDN GENIITTGGN NVLSTWNLDD EDSTSSLLDD PYDEELVFLR  300
NIFANHPVSL EHMDLSQGSD EITQSSSSGF MFKNPNPKPS SHNNIVGNQF GTMVTTEPAI  360
TSHLASDIYL SDLLDGSASS SSLSFMSSNN SEHAAENELF VPQANSTGER REMDLIEMLS  420
GSSTIGGTNN IWFPLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C5e-451122142104C-Myb DNA-Binding Domain
1msf_C5e-451122142104C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1210221KRRQNSKRKHKR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for female gametophyte fertility (PubMed:23057675, PubMed:24068955). Acts redundantly with MYB119 to initiate the FG5 transition during female gametophyte development. The FG5 transition represents the switch between free nuclear divisions and cellularization-differentiation in female gametophyte, and occurs during developmental stage FG5 (PubMed:24068955). {ECO:0000269|PubMed:23057675, ECO:0000269|PubMed:24068955}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa08g002200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5196200.0AY519620.1 Arabidopsis thaliana MYB transcription factor (At5g11050) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010419660.10.0PREDICTED: transcription factor MYB35-like
SwissprotQ9FY600.0MYB64_ARATH; Transcription factor MYB64
TrEMBLR0FKF00.0R0FKF0_9BRAS; Uncharacterized protein
STRINGXP_010419660.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42652656
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11050.10.0myb domain protein 64
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]