PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa07g062970.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | GeBP | ||||||||
Protein Properties | Length: 388aa MW: 41711.1 Da PI: 4.8964 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 126.5 | 1.1e-39 | 150 | 242 | 3 | 97 |
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 ++rlw+e+Dei++LqG+idfka+tgksp++d ++ y+f+kk isf+vsk+q+++K+r+L+kK+ +k+ k +g epsf+k+hdqk++el+k+iWg Csa07g062970.1 150 SHRLWTEDDEIAVLQGMIDFKADTGKSPYEDSNGYYDFIKKDISFEVSKNQFMDKLRSLRKKYMGKEVK--NGVEPSFAKPHDQKAYELAKIIWG 242 68***************************************************************9988..***********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 8.2E-32 | 151 | 242 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 388 aa Download sequence Send to blast |
MTKKLNPLED PPSASSSDDD DIETSEAGEP SDDSSSSEDD ESSKAPIKSL ASAAAAAASS 60 KSTVVAESDS GSETETDSDS ESTNPPNSGS GKTISVNLKK KEDPTSSAAL ALPAAKSGGT 120 KRPASEAATA SANKRVKKGG EEESVKKPGS HRLWTEDDEI AVLQGMIDFK ADTGKSPYED 180 SNGYYDFIKK DISFEVSKNQ FMDKLRSLRK KYMGKEVKNG VEPSFAKPHD QKAYELAKII 240 WGPQGIATES NVKSNGVSKK SKAKKKLDSV KQELVYAGSS PNGKRDDDGD GDDDDDDMDL 300 VVHGGGGSRK SDLFESSSLV RMIAGCGVDE YYVKRQWSLL PVETKKVVEE KLKLLQAKEL 360 EFVMEKTDFL HEVTSMIVEA SKNKKSH* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa07g062970.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010418144.1 | 0.0 | PREDICTED: probable transcription factor At1g61730 | ||||
Swissprot | Q9SYA9 | 1e-164 | STKLD_ARATH; Probable transcription factor At1g61730 | ||||
TrEMBL | A0A178WJA1 | 1e-161 | A0A178WJA1_ARATH; Uncharacterized protein | ||||
STRING | XP_010418144.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM313 | 28 | 181 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61730.1 | 5e-91 | DNA-binding storekeeper protein-related transcriptional regulator |