PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g057600.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family DBB
Protein Properties Length: 294aa    MW: 32252 Da    PI: 6.3806
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g057600.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.97.3e-07447542
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                     C+ +e  e+   C  ++  lC  C +++H        H++vpl
  Csa07g057600.1  4 QCNVCEAAEAVVLCCADEAALCWACDEKIHAAnklagkHQRVPL 47
                    7******99*********************66899999999986 PP
2zf-B_box25.33.1e-085490337
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg...H 37
                     +kC+ ++e    +fC +++ llC++C +++H     H
  Csa07g057600.1 54 IPKCDICQEASGFFFCLQDRALLCRKCDVAIH-TvnpH 90
                    689*******9********************9.33452 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.21147IPR000315B-box-type zinc finger
CDDcd000215.00E-8347No hitNo description
SMARTSM003361.5E-10447IPR000315B-box-type zinc finger
SMARTSM003363.8E-135299IPR000315B-box-type zinc finger
PROSITE profilePS501198.7595299IPR000315B-box-type zinc finger
PfamPF006433.0E-65589IPR000315B-box-type zinc finger
CDDcd000211.42E-85599No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MKIQCNVCEA AEAVVLCCAD EAALCWACDE KIHAANKLAG KHQRVPLSVS SSSIPKCDIC  60
QEASGFFFCL QDRALLCRKC DVAIHTVNPH VSAHQRFLLT GIKVGLESIE SGPSVKSSPT  120
NDTMDTKPLV QSLPPEPQKI DHHHHHHQQQ GVFPECKVSD QVSTKLPFAS SGSATGSIPQ  180
WQIEEIFGLT DFDQSYEYME NNGSSKADTS RRGDSDSSSM MRSAEEDAED NNNCLGGETS  240
WAVPQIQSPP TASGLNWPNK QFHHHSVFVP DIFSSDLYTG SSPKQRVGKR RRW*
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g057600.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0873870.0AY087387.1 Arabidopsis thaliana clone 34830 mRNA, complete sequence.
GenBankAY0931080.0AY093108.1 Arabidopsis thaliana highly similar to rice zinc finger protein (At1g78600) mRNA, complete cds.
GenBankBT0063240.0BT006324.1 Arabidopsis thaliana At1g78600 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010417463.10.0PREDICTED: B-box zinc finger protein 22
SwissprotQ9SYM21e-172BBX22_ARATH; B-box zinc finger protein 22
TrEMBLD7KVT11e-178D7KVT1_ARALL; Zinc finger (B-box type) family protein
STRINGXP_010417463.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56062849
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.11e-151light-regulated zinc finger protein 1