PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g057520.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family STAT
Protein Properties Length: 657aa    MW: 74440.2 Da    PI: 6.1606
Description STAT family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g057520.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1STAT181.41.2e-562173321117
            STAT   1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipklkky 95 
                     ld+vl+na+gqpv+kdvevvasLlyad+  + +k+++aeapLLi+ +Gvefss drp+kll+Gr+sfklkisqLssk dnrLf+ikf i++ k+y
  Csa07g057520.1 217 LDIVLSNAIGQPVHKDVEVVASLLYADT-RLEAKMSEAEAPLLIRDEGVEFSSDDRPIKLLNGRSSFKLKISQLSSKNDNRLFWIKFGIRNAKDY 310
                     89*************************9.7899************************************************************** PP

            STAT  96 pfleavskpirCisrsrntrss 117
                     pfl+avs+pirCis s ++r++
  Csa07g057520.1 311 PFLQAVSNPIRCISISPDVRPL 332
                     ******************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF498991.87E-629161IPR013320Concanavalin A-like lectin/glucanase domain
CDDcd103383.66E-56559656No hitNo description
Gene3DG3DSA:3.30.505.106.4E-9566624IPR000980SH2 domain
SuperFamilySSF555503.5E-11567653IPR000980SH2 domain
PROSITE profilePS500019.589570635IPR000980SH2 domain
Sequence ? help Back to Top
Protein Sequence    Length: 657 aa     Download sequence    Send to blast
MAGVSAIETE KYSLLEDFKV DVEVDDEEYK SFSLCFWAYL VNSTTFPSTI IRQVHSDMSV  60
SAPFLVLDEN KKMMLLPLTL LHKEAPDPVD TCSRKQVPSV STKSEFPFDK WVHVGCEVSR  120
NYMRLVIDGK IEGEHFLTSL LTKNSNRKIS LFGVGGDGYS VQGFIKCAQV LPACDHVDHH  180
YMKDPPLLLS VNKSSSSGIK LDDDGVWKAS CGEVFSLDIV LSNAIGQPVH KDVEVVASLL  240
YADTRLEAKM SEAEAPLLIR DEGVEFSSDD RPIKLLNGRS SFKLKISQLS SKNDNRLFWI  300
KFGIRNAKDY PFLQAVSNPI RCISISPDVR PLPKRLANID HPSSTESPDL LQNNTCSVKR  360
IRLGKESDSG REESYSYQHC NSYPQTSRQF EDRNGHEEYN SPSGSENVEM RHTISDSTIF  420
RYCLGNLKDK ALLLKEITNN SSDEEVLKFA NQVSLYSGCS HHSYQISMAR ELIAQGTSAW  480
ISMSRNNQHV HWDNVVYEIE EHFMRISKCS SRSLTHQDFE LLRRISGCYL YDEYMTQENF  540
ENIWCWLFPV AYTISRGLIS EMWCSSSPKW VQGFITKEEA EHSLQGQEPG TFILRFPVSR  600
SWPHPDAGSL VVTYVGHDFA LHHKQLNICQ SSGRYMDAKL LQDMLLAEPE LSHLGK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g057520.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2215320.0AK221532.1 Arabidopsis thaliana mRNA for Hypothetical protein, complete cds, clone: RAFL07-69-D06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010417450.10.0PREDICTED: uncharacterized protein LOC104703186
SwissprotQ56XZ10.0SHB_ARATH; SH2 domain-containing protein B
TrEMBLD7KVC10.0D7KVC1_ARALL; Uncharacterized protein
STRINGXP_010417450.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52052645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78540.20.0SH2 domain protein B
Publications ? help Back to Top
  1. Yamada Y,Wang HY,Fukuzawa M,Barton GJ,Williams JG
    A new family of transcription factors.
    Development, 2008. 135(18): p. 3093-101
    [PMID:18701541]