PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa07g054750.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

Protein Properties

Length: 519aa MW: 58859.6 Da PI: 8.1099

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa07g054750.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	33.6	7.1e-11	2	59	40	97
ETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 40 desgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 +e+g+sW + l++ + sgr+ +++GW++F+ ang k gD +vFkl+++ e+++v+++f Csa07g054750.1 2 NEEGESWIIDLRHeEYPSGRFNMRRGWRRFCVANGKKPGDKMVFKLVQN-EETPVLQLF 59 899******994445556************************995.555887776 PP
2	B3	63.5	3.4e-20	94	184	4	97
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 + ++ ++l ++r++lpkkf+ ++g+ k ++++ l++e+g+sW++ ++++ +sgr++ t+GW++F+ an+ k gD+++Fkl+++ ++ +v++vf Csa07g054750.1 94 ASVTTSNLWRDRMYLPKKFILSNGLFK--KFQMLLMNEEGESWKIDMKHEAYSGRFLTTRGWRSFCVANDKKPGDSFIFKLVQN-QEIPVLRVF 184 45677888899**********9985..568***********************************************995.444677665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd10017	8.73E-8	1	60	No hit	No description
PROSITE profile	PS50863	13.183	1	62	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.3E-9	1	59	IPR003340	B3 DNA binding domain
SMART	SM01019	0.0051	1	62	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	6.3E-10	2	56	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.96E-9	2	59	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.39E-20	86	181	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	2.2E-20	87	181	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	13.493	91	187	IPR003340	B3 DNA binding domain
CDD	cd10017	3.06E-18	91	185	No hit	No description
SMART	SM01019	5.5E-27	92	187	IPR003340	B3 DNA binding domain
Pfam	PF02362	4.9E-18	94	184	IPR003340	B3 DNA binding domain
SMART	SM01019	0.0041	268	341	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	2.35E-8	274	337	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	7.3E-7	276	337	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	2.8E-7	277	335	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	6.893	277	343	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 519 aa Download sequence Send to blast
MNEEGESWII DLRHEEYPSG RFNMRRGWRR FCVANGKKPG DKMVFKLVQN EETPVLQLFP 60 IDSEDQEKLE NVPRKKSRKE EEDYSPDDCS CFVASVTTSN LWRDRMYLPK KFILSNGLFK 120 KFQMLLMNEE GESWKIDMKH EAYSGRFLTT RGWRSFCVAN DKKPGDSFIF KLVQNQEIPV 180 LRVFPLYSED RHKLEPSNDT RQGKCLKATK AEFLGIEDYR DASLQGKCFK AGVAEPTGED 240 TRQRKRSQAI KQEYVSVEGN NSTGQNQLVT LTLTPARKIT MLDIYGSRWR TSLLMDNRGT 300 MSLGKGSKGF CEVHGVKMHE SFVLELIWED TVPLLKFALF LNCRCLIRWL VGYYDGFVAH 360 MVLKLIGFFL GTTTRPALIS LLGLPGKLIK SIQDGFEGWT IFTTKFVFLI SFLSFKPTIG 420 EGGIICTLPN SCSQSPTLKS AFSLSSDDIF CYLGTGLGLN ASTTAANLSK EEDQMFASCR 480 FSEDSAGNEL FALLQTLNVM EVLQHVIRNH GNEKSQSL*

Sequence ? help Back to Top

Protein Sequence Length: 519 aa Download sequence Send to blast

MNEEGESWII DLRHEEYPSG RFNMRRGWRR FCVANGKKPG DKMVFKLVQN EETPVLQLFP  60
IDSEDQEKLE NVPRKKSRKE EEDYSPDDCS CFVASVTTSN LWRDRMYLPK KFILSNGLFK  120
KFQMLLMNEE GESWKIDMKH EAYSGRFLTT RGWRSFCVAN DKKPGDSFIF KLVQNQEIPV  180
LRVFPLYSED RHKLEPSNDT RQGKCLKATK AEFLGIEDYR DASLQGKCFK AGVAEPTGED  240
TRQRKRSQAI KQEYVSVEGN NSTGQNQLVT LTLTPARKIT MLDIYGSRWR TSLLMDNRGT  300
MSLGKGSKGF CEVHGVKMHE SFVLELIWED TVPLLKFALF LNCRCLIRWL VGYYDGFVAH  360
MVLKLIGFFL GTTTRPALIS LLGLPGKLIK SIQDGFEGWT IFTTKFVFLI SFLSFKPTIG  420
EGGIICTLPN SCSQSPTLKS AFSLSSDDIF CYLGTGLGLN ASTTAANLSK EEDQMFASCR  480
FSEDSAGNEL FALLQTLNVM EVLQHVIRNH GNEKSQSL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa07g054750.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010429457.1	0.0	PREDICTED: B3 domain-containing protein REM10-like
Refseq	XP_010472483.1	0.0	PREDICTED: B3 domain-containing protein REM10-like isoform X2
Swissprot	P0DH85	1e-153	REM10_ARATH; B3 domain-containing protein REM10
TrEMBL	R0FW98	1e-166	R0FW98_9BRAS; Uncharacterized protein
STRING	XP_010429457.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14490	15	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24700.1	1e-155	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]