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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa07g054710.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | B3 | ||||||||
Protein Properties | Length: 386aa MW: 43542.2 Da PI: 7.6422 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 56.2 | 6.5e-18 | 38 | 127 | 4 | 95 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 + +++ +l+++ l+lp +f++++++k ++ ++ l+d + rsW + l+ +k +++++++GWk+F+++ng ++g f++Fkl ++ +++++++ Csa07g054710.1 38 AHVTAASLERDALYLPQDFTSSNDLKRKC-CKIFLKDGEERSWAMDLRLNKLTDTCYISRGWKHFCDENGKNAGSFFTFKLLEN-GETPLLS 127 567888999999***********999655.6*************************************************9874.4445555 PP | |||||||
2 | B3 | 59.8 | 4.9e-19 | 159 | 251 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f++ ++++d+lks+rl+lp +f++e+g++ +++++tl ++g +W +l r +sgr+ l+kG k+F +angLk g++++++l++ +++++v+ Csa07g054710.1 159 FVTLTLTNDSLKSSRLYLPLPFVRENGMN--NPRMVTLLGKDGIRWAANL-LRENSGRMSLGKGMKDFSRANGLKIGESFTLELIW-ENATPVLN 249 7788899*******************999..5669***************.799999*****************************.77778887 PP EE CS B3 96 vf 97 +f Csa07g054710.1 250 LF 251 76 PP | |||||||
3 | B3 | 57.1 | 3.4e-18 | 261 | 358 | 1 | 98 |
EEEE-..-HHHHTT-E....E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrl....vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f++ ++++d+l+++rl lp +f++e++++k++ ++tl +g +W +l + ++gr+ l+kGWkeF+kangL++g +++++ ++ ++++ Csa07g054710.1 261 FVTLTVTHDSLNNNRLnlfqGLPLSFMRENDMNKPG--KITLLGNDGTKWIANL-LQESRGRMSLGKGWKEFAKANGLEVGVSFTLESIW-EDTT 351 7788999******999888899********999766..7***************.7999999*************************999.8888 PP .EEEEE- CS B3 92 lvvkvfr 98 +++++f+ Csa07g054710.1 352 PMLGLFS 358 9999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.9E-17 | 30 | 126 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.55E-18 | 32 | 135 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.72E-14 | 35 | 128 | No hit | No description |
SMART | SM01019 | 6.9E-19 | 35 | 132 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.338 | 35 | 132 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.9E-16 | 38 | 125 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.0E-18 | 150 | 248 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.55E-19 | 156 | 252 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.08E-18 | 158 | 252 | No hit | No description |
PROSITE profile | PS50863 | 13.874 | 159 | 254 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.0E-27 | 159 | 254 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.2E-18 | 159 | 251 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.1E-16 | 255 | 353 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.51E-17 | 258 | 354 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.72E-15 | 260 | 358 | No hit | No description |
PROSITE profile | PS50863 | 12.097 | 261 | 360 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 8.1E-22 | 261 | 360 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.7E-18 | 261 | 358 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 386 aa Download sequence Send to blast |
MMIEEASDHQ DNNIEFQRKK KVKQNNPETE ADCSCFVAHV TAASLERDAL YLPQDFTSSN 60 DLKRKCCKIF LKDGEERSWA MDLRLNKLTD TCYISRGWKH FCDENGKNAG SFFTFKLLEN 120 GETPLLSVWP TKSENDRTQG DSNSSQSCED STPPNHNRFV TLTLTNDSLK SSRLYLPLPF 180 VRENGMNNPR MVTLLGKDGI RWAANLLREN SGRMSLGKGM KDFSRANGLK IGESFTLELI 240 WENATPVLNL FCKEVKIQNR FVTLTVTHDS LNNNRLNLFQ GLPLSFMREN DMNKPGKITL 300 LGNDGTKWIA NLLQESRGRM SLGKGWKEFA KANGLEVGVS FTLESIWEDT TPMLGLFSIE 360 STSDKRQQRE CCSTASENSS ISTKP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa07g054710.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010417230.1 | 0.0 | PREDICTED: B3 domain-containing protein REM12-like | ||||
Swissprot | P0CAP4 | 1e-107 | REM12_ARATH; B3 domain-containing protein REM12 | ||||
TrEMBL | A0A1J3JLQ3 | 0.0 | A0A1J3JLQ3_NOCCA; B3 domain-containing protein REM12 | ||||
STRING | XP_010417230.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7828 | 16 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24680.1 | 1e-109 | B3 family protein |