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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | Csa07g054680.2 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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| Family | B3 | ||||||||
| Protein Properties | Length: 816aa MW: 91497.4 Da PI: 8.8685 | ||||||||
| Description | B3 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | B3 | 68.1 | 1.2e-21 | 96 | 191 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
f+k + + ++++rl+lp +f++e+g+++++ ++ l ++g +W +l ++++gr++l++GWk+FvkangLk+g++v+++l + +++ +v++
Csa07g054680.2 96 FIKFRLAPVDGRHCRLRLPMQFTRENGINTPG--KIYLLGKDGSKWLANLLLENTRGRMTLGDGWKSFVKANGLKTGESVTLRLCW-EDTIPVLS 187
77888888999****************99766..8*************************************************99.77778988 PP
EE-S CS
B3 96 vfrk 99
++++
Csa07g054680.2 188 LCSE 191
8875 PP
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| 2 | B3 | 68.3 | 1e-21 | 249 | 339 | 4 | 98 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
++++d+lk+grl+lp +f++e++++k++ ++tl ++g +W v l k+gr+ l+kGWk+F+kangL++ D+++++l++ +++++ ++++r
Csa07g054680.2 249 LTITPDSLKHGRLRLPLQFMAENNMDKPG--EITLLGKDGAKWLVSLL-LEKRGRMSLGKGWKDFAKANGLRTDDSITLELIW-ENATPILHLLR 339
6789*******************999766..8***************5.66667889**************************.77778887765 PP
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| 3 | B3 | 67.2 | 2.3e-21 | 579 | 661 | 1 | 86 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86
f++ ++++d+l++grl+lp +f++e++++k++ ++tl ++g +W v l ++gr+ l+kGWk+F+k+ngLk+gD+++F+ +g
Csa07g054680.2 579 FLTLTITPDSLRHGRLRLPLDFMTENNMNKPG--EITLLGKNGAKWLVSLL-LERRGRMSLGKGWKNFAKENGLKTGDSITFESIG 661
778899********************999766..8***************5.55556789**********************9554 PP
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| 4 | B3 | 49.9 | 5.6e-16 | 724 | 809 | 4 | 93 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93
++++ + g l lp kf++ +g++k++ ++tl + g +W +l ++g++vl++GWk+F++ang+ gD+++++++ +++++ v
Csa07g054680.2 724 LTLTPEDVRDGTLHLPSKFMRINGINKPG--QITLLGRGGMKWFAYL--LPRDGTVVLGNGWKGFCEANGVMLGDSFILEFIPKEDTNHV 809
455566666778********999999877..6***************..*******************************9966666555 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF101936 | 5.1E-21 | 93 | 190 | IPR015300 | DNA-binding pseudobarrel domain |
| Gene3D | G3DSA:2.40.330.10 | 5.7E-20 | 94 | 191 | IPR015300 | DNA-binding pseudobarrel domain |
| Pfam | PF02362 | 7.5E-21 | 96 | 191 | IPR003340 | B3 DNA binding domain |
| PROSITE profile | PS50863 | 14.847 | 96 | 192 | IPR003340 | B3 DNA binding domain |
| CDD | cd10017 | 1.13E-18 | 96 | 190 | No hit | No description |
| SMART | SM01019 | 1.1E-29 | 96 | 192 | IPR003340 | B3 DNA binding domain |
| Gene3D | G3DSA:2.40.330.10 | 6.2E-21 | 238 | 335 | IPR015300 | DNA-binding pseudobarrel domain |
| SuperFamily | SSF101936 | 2.35E-22 | 242 | 337 | IPR015300 | DNA-binding pseudobarrel domain |
| CDD | cd10017 | 7.13E-20 | 245 | 339 | No hit | No description |
| PROSITE profile | PS50863 | 15.312 | 246 | 341 | IPR003340 | B3 DNA binding domain |
| SMART | SM01019 | 3.8E-30 | 246 | 341 | IPR003340 | B3 DNA binding domain |
| Pfam | PF02362 | 8.2E-21 | 248 | 339 | IPR003340 | B3 DNA binding domain |
| Gene3D | G3DSA:2.40.330.10 | 2.1E-21 | 574 | 669 | IPR015300 | DNA-binding pseudobarrel domain |
| SuperFamily | SSF101936 | 2.94E-23 | 575 | 670 | IPR015300 | DNA-binding pseudobarrel domain |
| Pfam | PF02362 | 4.5E-20 | 579 | 661 | IPR003340 | B3 DNA binding domain |
| PROSITE profile | PS50863 | 16.525 | 579 | 676 | IPR003340 | B3 DNA binding domain |
| CDD | cd10017 | 9.79E-19 | 579 | 671 | No hit | No description |
| SMART | SM01019 | 1.5E-27 | 579 | 674 | IPR003340 | B3 DNA binding domain |
| Gene3D | G3DSA:2.40.330.10 | 2.3E-19 | 713 | 810 | IPR015300 | DNA-binding pseudobarrel domain |
| SuperFamily | SSF101936 | 6.47E-22 | 715 | 811 | IPR015300 | DNA-binding pseudobarrel domain |
| CDD | cd10017 | 1.58E-15 | 720 | 814 | No hit | No description |
| Pfam | PF02362 | 4.8E-15 | 721 | 811 | IPR003340 | B3 DNA binding domain |
| PROSITE profile | PS50863 | 14.085 | 721 | 815 | IPR003340 | B3 DNA binding domain |
| SMART | SM01019 | 1.4E-19 | 721 | 814 | IPR003340 | B3 DNA binding domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 816 aa Download sequence Send to blast |
MANSLILGSP INPEKDMMIQ VSDHQNNNIE FQRKKKVKQN NTETEADCSY FNAHVTASSQ 60 QSGRLYLPQD FTSSSGLIRK CSKSPPQIIS SSDKNFIKFR LAPVDGRHCR LRLPMQFTRE 120 NGINTPGKIY LLGKDGSKWL ANLLLENTRG RMTLGDGWKS FVKANGLKTG ESVTLRLCWE 180 DTIPVLSLCS EEYITDTRVG KKCSEASEKE PLPTVPETKK DESSSWKREN NHMRCIDSTS 240 PSQNHILTLT ITPDSLKHGR LRLPLQFMAE NNMDKPGEIT LLGKDGAKWL VSLLLEKRGR 300 MSLGKGWKDF AKANGLRTDD SITLELIWEN ATPILHLLRI ESSSGRGECD FSKESLPIEP 360 NSGNKARNSD NNREESKKYP PGSRESSSAI QNQFMALTRP SGIISQGALH LQTNEVFIYR 420 NEGGNMLQIS DLGPYFFGIR DVPAPSSNND HDRIGNISMK MHPHLRKEAG FSSYDGDDHD 480 NFERQSKKRV RKNDPETEEN CSSDHTRFGA HVTTTSNLHT NELRLAAKES LPIGPSVEKK 540 ISEGENSKDK NNMVESSSCG REENHLRCIA SISPSQNRFL TLTITPDSLR HGRLRLPLDF 600 MTENNMNKPG EITLLGKNGA KWLVSLLLER RGRMSLGKGW KNFAKENGLK TGDSITFESI 660 GLNASHVLSL LYIESSSVRG QSEFPKESHL TNREERNSRE LEKRTYCPSI QNSSSDIQNR 720 FLTLTLTPED VRDGTLHLPS KFMRINGINK PGQITLLGRG GMKWFAYLLP RDGTVVLGNG 780 WKGFCEANGV MLGDSFILEF IPKEDTNHVF NFYSI* |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Csa07g054680.2 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_010417225.1 | 0.0 | PREDICTED: B3 domain-containing protein REM-like 1 isoform X1 | ||||
| Refseq | XP_010417226.1 | 0.0 | PREDICTED: B3 domain-containing protein REM-like 1 isoform X2 | ||||
| Swissprot | Q8S8E8 | 0.0 | REML1_ARATH; B3 domain-containing protein REM-like 1 | ||||
| TrEMBL | A0A1P8B0R0 | 0.0 | A0A1P8B0R0_ARATH; Transcriptional factor B3 family protein | ||||
| STRING | XP_010417226.1 | 0.0 | (Camelina sativa) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G24690.1 | 0.0 | B3 family protein | ||||
| Publications ? help Back to Top | |||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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