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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa07g054670.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | B3 | ||||||||
Protein Properties | Length: 716aa MW: 79613.5 Da PI: 9.8689 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 67.6 | 1.7e-21 | 53 | 148 | 2 | 99 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 f +l+++++l ++ l+lp + +++ g + ++s +++++de+ rsW + l+++k+s+++++t+GW++F+++ng k+g ++vFkl+g + +++v+++ Csa07g054670.1 53 FVALVTASNLHNDTLYLPQDLTSSVGRQRNCS-EIVVTDEKERSWPLDLRFNKSSETFYITRGWRSFCDENGKKAGGVFVFKLVG-NWETPVLSF 145 568999****************9999998887.***************************************************9.677789999 PP E-S CS B3 97 frk 99 +++ Csa07g054670.1 146 CST 148 986 PP | |||||||
2 | B3 | 61.3 | 1.6e-19 | 188 | 282 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f++ ++++++lk++r +lp +f++++g++k++ ++tl + g +W l+ r g++vl+kGW++FvkangL +g ++++++++ ++++++++ Csa07g054670.1 188 FVTLTLTHNSLKKCRQYLPSSFLRKNGLDKPG--MITLLGKAGMKWLASLK-REANGSMVLGKGWNDFVKANGLTSGKSFTLEVIS-EKGTPMLS 278 67788899*********************766..8***************4.5555569************************998.88999999 PP EE-S CS B3 96 vfrk 99 +f++ Csa07g054670.1 279 LFST 282 9986 PP | |||||||
3 | B3 | 47.1 | 4.1e-15 | 298 | 392 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f++ ++++ +l ++r +lp +f++++g++k++ +tl e+g +We +l r+k g + l+kGWk+F +an +k g+++++k + ++++++++ Csa07g054670.1 298 FVTLTLTHTNLIKSRQYLPLSFTKANGLDKPG--LITLVGEDGAKWEANL-LRGKTGIMCLGKGWKHFSRANSIKCGESFTLKAIL-ENGTPMLS 388 5566667778888899*************877..7***************.566666799***********************776.88999999 PP EE-S CS B3 96 vfrk 99 ++++ Csa07g054670.1 389 LCST 392 9986 PP | |||||||
4 | B3 | 51.8 | 1.5e-16 | 444 | 538 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f++ ++++d+l +gr +lp +f++e+g++k++ ++ l ++g +We ++ r+k g + ++kGWk+F+ angLk+g++++++++ ++++++++ Csa07g054670.1 444 FVTLTLRHDNLITGRRYLPFSFTRENGLDKPG--KINLIGKDGTKWEANI-GRGKTGVMCIGKGWKNFAIANGLKSGESFTLEVIL-ENGTPMLS 534 667778899999*****************777..7***************.455555599***********************887.88889999 PP EE-S CS B3 96 vfrk 99 +f++ Csa07g054670.1 535 LFST 538 9986 PP | |||||||
5 | B3 | 42.5 | 1.1e-13 | 630 | 711 | 13 | 98 |
TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 + + ++p +f++++g++k + +t+ ++ + +l k+g + l++GWk+F++ang+k gD+++++ + +++++ v+k+ + Csa07g054670.1 630 NILKIIPSQFMKANGINKLG--RITILGQHRMKCFAYL--LSKDGFVALGSGWKGFCEANGVKIGDSFTLECICEQDTTHVFKFSS 711 55569**********99877..6999999999998888..999999*************************999888877777765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.7E-21 | 45 | 148 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.2E-21 | 48 | 148 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.96E-15 | 52 | 136 | No hit | No description |
PROSITE profile | PS50863 | 14.748 | 52 | 148 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.0E-29 | 53 | 149 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.6E-20 | 53 | 148 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.7E-20 | 180 | 287 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.24E-20 | 184 | 281 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.79E-15 | 187 | 281 | No hit | No description |
SMART | SM01019 | 1.5E-27 | 188 | 283 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 15.425 | 188 | 283 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.2E-19 | 188 | 282 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 8.9E-16 | 288 | 399 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.32E-17 | 296 | 393 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.49E-14 | 297 | 391 | No hit | No description |
SMART | SM01019 | 2.7E-24 | 298 | 393 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.6E-14 | 298 | 392 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.634 | 298 | 393 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.14E-16 | 441 | 532 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.2E-14 | 441 | 528 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.72E-15 | 443 | 537 | No hit | No description |
PROSITE profile | PS50863 | 14.353 | 444 | 539 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.7E-26 | 444 | 539 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.9E-15 | 444 | 538 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.0E-14 | 580 | 602 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 8.727 | 618 | 712 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.3E-10 | 622 | 713 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.2E-12 | 630 | 711 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.75E-13 | 632 | 711 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.63E-9 | 634 | 710 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 3.0E-14 | 634 | 712 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 716 aa Download sequence Send to blast |
MFSAGNILRK KHRRMRTDEG DDDQDNTEHV RNKKWKNSFE TEVDSSSSDH SCFVALVTAS 60 NLHNDTLYLP QDLTSSVGRQ RNCSEIVVTD EKERSWPLDL RFNKSSETFY ITRGWRSFCD 120 ENGKKAGGVF VFKLVGNWET PVLSFCSTES INDGTQGDKN NKENCMQLER KQKRMRCRVS 180 TLPSQNRFVT LTLTHNSLKK CRQYLPSSFL RKNGLDKPGM ITLLGKAGMK WLASLKREAN 240 GSMVLGKGWN DFVKANGLTS GKSFTLEVIS EKGTPMLSLF STQSTSERSQ QRASMNRFVT 300 LTLTHTNLIK SRQYLPLSFT KANGLDKPGL ITLVGEDGAK WEANLLRGKT GIMCLGKGWK 360 HFSRANSIKC GESFTLKAIL ENGTPMLSLC STQSTSDRSQ QGECSKGSEK ESILAGHSSG 420 KETRKAKDKI EGRRDSLPAS MNRFVTLTLR HDNLITGRRY LPFSFTRENG LDKPGKINLI 480 GKDGTKWEAN IGRGKTGVMC IGKGWKNFAI ANGLKSGESF TLEVILENGT PMLSLFSTEA 540 TSGRSQQGER CKDSEKGSIS AEPTRGNKAT SNREERTDSS SAIRNRFVTL TLTPEDVRDC 600 KLVSSSDKSC FEDVLVYVLI PISNELYYSN ILKIIPSQFM KANGINKLGR ITILGQHRMK 660 CFAYLLSKDG FVALGSGWKG FCEANGVKIG DSFTLECICE QDTTHVFKFS SNSVE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa07g054670.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019083487.1 | 0.0 | PREDICTED: B3 domain-containing protein REM12-like isoform X2 | ||||
Swissprot | P0CAP4 | 1e-154 | REM12_ARATH; B3 domain-containing protein REM12 | ||||
TrEMBL | A0A1P8AXF8 | 0.0 | A0A1P8AXF8_ARATH; Transcriptional factor B3 family protein | ||||
STRING | XP_010417224.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7828 | 16 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24680.1 | 1e-149 | B3 family protein |