PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g054160.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 285aa    MW: 29398.9 Da    PI: 9.5533
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g054160.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.56.7e-1083126555
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     h+++Er RR+ri +++  L+el+P+         +Ka++L + ++Y+k Lq
  Csa07g054160.1  83 HSIAERLRRERIAERMKALQELVPNG-------XDKASMLDEIIDYVKFLQ 126
                     99***********************6.......59***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.7E-1476135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.56E-1276130No hitNo description
PROSITE profilePS5088812.39278125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-1480135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-783126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-1184131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MMMPLTDGSS VHALYNGFAA SGSLPNFHIP QGSGGGLMNQ ERQTQTPSQP QARASTATGG  60
TVAAPPQSRT KVRARRGQAT DPHSIAERLR RERIAERMKA LQELVPNGXD KASMLDEIID  120
YVKFLQLQVK VLSMSRLGGA ASVSSQISEA GGSHGNATSA MAGGSQTAGN SNDSITMTEH  180
QVAKLMEEDM GSAMQYLQGK GLCLMPISLA TAISTATCHT TRNPLIPGAA DVGGPSSPNL  240
SNMTIQSTNT TMGNGNGKLK GNGNGVIEGS SSIAVKEAVS VSKP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18792RLRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g054160.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1763700.0AK176370.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor (bHLH066), complete cds, clone: RAFL24-07-J21.
GenBankBT0265120.0BT026512.1 Arabidopsis thaliana At2g24260 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010419295.10.0PREDICTED: transcription factor bHLH66-like
SwissprotQ9ZUG91e-171BH066_ARATH; Transcription factor bHLH66
TrEMBLA0A178VTY51e-168A0A178VTY5_ARATH; LRL1
STRINGXP_010419295.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30422763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.11e-151LJRHL1-like 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]