PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g052400.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family CAMTA
Protein Properties Length: 1034aa    MW: 115927 Da    PI: 5.5743
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g052400.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1182.54.8e-57201363118
            CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 
                     +e ++rwl++ ei++iL+n++++++++e++t+p+sgs+++++rk++ryfrkDG++w+kkkdgktv+E+he+LK g+v+vl+cyYah+++n++fqr
  Csa07g052400.1  20 SEaRHRWLRPPEICEILQNYQRFQISTEPPTTPSSGSVFMFDRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKAGSVDVLHCYYAHGQDNENFQR 114
                     4449******************************************************************************************* PP

            CG-1  97 rcywlLeeelekivlvhylevk 118
                     r+ywlL+eel++iv+vhylevk
  Csa07g052400.1 115 RSYWLLQEELSHIVFVHYLEVK 136
                     *******************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143782.70815141IPR005559CG-1 DNA-binding domain
SMARTSM010763.4E-8518136IPR005559CG-1 DNA-binding domain
PfamPF038591.0E-4921135IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.102.3E-4464552IPR013783Immunoglobulin-like fold
SuperFamilySSF812969.8E-17466551IPR014756Immunoglobulin E-set
SuperFamilySSF484031.18E-15635757IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.3E-15642757IPR020683Ankyrin repeat-containing domain
CDDcd002042.74E-11642754No hitNo description
PROSITE profilePS5029716.228645754IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500889.164695727IPR002110Ankyrin repeat
SuperFamilySSF525402.1E-8849903IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.92852874IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.974854880IPR000048IQ motif, EF-hand binding site
PfamPF006120.0041855873IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0054875897IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.432876900IPR000048IQ motif, EF-hand binding site
PfamPF006127.7E-4878897IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010150Biological Processleaf senescence
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 1034 aa     Download sequence    Send to blast
MAEARRFSPV SELDVGQILS EARHRWLRPP EICEILQNYQ RFQISTEPPT TPSSGSVFMF  60
DRKVLRYFRK DGHNWRKKKD GKTVKEAHER LKAGSVDVLH CYYAHGQDNE NFQRRSYWLL  120
QEELSHIVFV HYLEVKGSRV STSFNRMQKT EDATRSPQET GEALTSEHDG YASCSFNQND  180
HSNHSQTTDS ASVNGFHTPE LEDAESAYNQ HGSSIVYSHQ ERQQPATRGN LTDFDPYYQV  240
SLTPRDSYQK EFRTVPITHS SVMVDKSKTI NSPGVTNGLR NKKSIDSQTW EEILGNCGSG  300
AEGVPLQPNS EHEVLDQILQ SSSFTMQDFA SLQESMIKSG NQELNLGVTS DHTVCFQGQD  360
IEPNAICSLA SNEKAPYLST MKQHLLDGAL GEEGLKKMDS FNRWMSKELG DVGVLADANE  420
SFTQSSSRTY WGEVESEDGS NGHNSRRDLD GYVMSPSLSK EQLFSISDFS PSWAYVGCQV  480
VVFVTGKFLK TREEAEIGEW SCMFGQTEVP ADVIANGVLQ CVAPMHEAGR VPFYVTCSNR  540
LACSEVREFE YKVAESQIFD RETDDESTID ILEARFVKLL CSKSESSTAV SGNDSDLSQV  600
SEKISLLLFE NDDQLDQMLM NEISQENMKK NLLQEFLKES LHSWLLQKIA EGGKGPSVLD  660
EGGQGVLHFA ASLGYNWALE PTILAGVSVD FRDVNGWTAL HWAAFFGRER IIGSLIALGA  720
APGTLTDPNP DFPSGSTPSD LAYANGHKGI AGYLSEYALR AHVSLLSLND NNAETVETAP  780
SPSSSSLTDS LTAVRNATQA AARIHQVFRA QSFQKKQLKE LGDRKRGMSE ERALSMLAPK  840
THKSGRAHSD DSVQAAAIRI QNKFRGYKGR KDYLITRQRI IRIQAHVRGY QVRKNYRKII  900
WSVGILEKVI LRWRRKGAGL RGFKSDALVD NRMQDETEKE EDDDFFKQGR KQTEERLQKA  960
LARVKSMVQY PEARDQYRRL LNVVNDIQES KVEKALENSE GAACFDDDLI DIEALLGDDD  1020
TLMLPMSSSL WTN*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3'. Binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance in association with CAMTA1 and CAMTA2 (PubMed:23581962). Required for the cold-induced expression of DREB1B/CBF1, DREB1C/CBF2, ZAT12 and GOLS3 (PubMed:19270186). Involved in response to cold. Contributes together with CAMTA5 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). Involved together with CAMTA2 and CAMTA4 in the positive regulation of a general stress response (GSR) (PubMed:25039701). Involved in the regulation of GSR amplitude downstream of MEKK1 (PubMed:25157030). Involved in the regulation of a set of genes involved in defense responses against pathogens (PubMed:18298954). Involved in the regulation of both basal resistance and systemic acquired resistance (SAR) (PubMed:21900483). Acts as negative regulator of plant immunity (PubMed:19122675, PubMed:21900483, PubMed:22345509, PubMed:28407487). Binds to the promoter of the defense-related gene EDS1 and represses its expression (PubMed:19122675). Binds to the promoter of the defense-related gene NDR1 and represses its expression (PubMed:22345509). Involved in defense against insects (PubMed:23072934, PubMed:22371088). Required for tolerance to the generalist herbivore Trichoplusia ni, and contributes to the positive regulation of genes associated with glucosinolate metabolism (PubMed:23072934). Required for tolerance to Bradysia impatiens larvae. Mediates herbivore-induced wound response (PubMed:22371088). Required for wound-induced jasmonate accumulation (PubMed:23072934, PubMed:22371088). Involved in the regulation of ethylene-induced senescence by binding to the promoter of the senescence-inducer gene EIN3 and repressing its expression (PubMed:22345509). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:18298954, ECO:0000269|PubMed:19122675, ECO:0000269|PubMed:19270186, ECO:0000269|PubMed:21900483, ECO:0000269|PubMed:22345509, ECO:0000269|PubMed:22371088, ECO:0000269|PubMed:23072934, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25157030, ECO:0000269|PubMed:28351986, ECO:0000269|PubMed:28407487, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00042PBMTransfer from AT2G22300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g052400.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene and methyl jasmonate (PubMed:11162426, PubMed:12218065). Induced by infection with the fungal pathogen Golovinomyces cichoracearum (powdery mildew) and the bacterial pathogen Pseudomonas syringae pv tomato strain DC3000 (PubMed:22345509). {ECO:0000269|PubMed:11162426, ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:22345509}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF5066970.0AF506697.1 Arabidopsis thaliana calmodulin-binding transcription factor SR1 (SR1) mRNA, complete cds.
GenBankAY5100250.0AY510025.1 Arabidopsis thaliana ethylene-induced calmodulin-binding protein 1 mRNA, complete cds.
GenBankBT0024590.0BT002459.1 Arabidopsis thaliana Unknown protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010416993.10.0PREDICTED: calmodulin-binding transcription activator 3-like
SwissprotQ8GSA70.0CMTA3_ARATH; Calmodulin-binding transcription activator 3
TrEMBLR0HWU60.0R0HWU6_9BRAS; Uncharacterized protein
STRINGXP_010416993.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86012535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22300.20.0signal responsive 1
Publications ? help Back to Top
  1. Zhang L,Du L,Shen C,Yang Y,Poovaiah BW
    Regulation of plant immunity through ubiquitin-mediated modulation of Ca(2+) -calmodulin-AtSR1/CAMTA3 signaling.
    Plant J., 2014. 78(2): p. 269-81
    [PMID:24528504]
  2. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  3. Rahman H,Yang J,Xu YP,Munyampundu JP,Cai XZ
    Phylogeny of Plant CAMTAs and Role of AtCAMTAs in Nonhost Resistance to Xanthomonas oryzae pv. oryzae.
    Front Plant Sci, 2016. 7: p. 177
    [PMID:26973658]
  4. Benn G, et al.
    Plastidial metabolite MEcPP induces a transcriptionally centered stress-response hub via the transcription factor CAMTA3.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(31): p. 8855-60
    [PMID:27432993]
  5. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]
  6. Lolle S, et al.
    Matching NLR Immune Receptors to Autoimmunity in camta3 Mutants Using Antimorphic NLR Alleles.
    Cell Host Microbe, 2017. 21(4): p. 518-529.e4
    [PMID:28407487]
  7. Kim YS, et al.
    CAMTA-Mediated Regulation of Salicylic Acid Immunity Pathway Genes in Arabidopsis Exposed to Low Temperature and Pathogen Infection.
    Plant Cell, 2017. 29(10): p. 2465-2477
    [PMID:28982964]
  8. Jacob F, et al.
    A dominant-interfering camta3 mutation compromises primary transcriptional outputs mediated by both cell surface and intracellular immune receptors in Arabidopsis thaliana.
    New Phytol., 2018. 217(4): p. 1667-1680
    [PMID:29226970]