PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g052310.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 274aa    MW: 30833.5 Da    PI: 7.1309
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g052310.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2612.7e-1985133355
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     y+GVr+++ +g+WvAeIr p++   r+r +lg+f tae+Aa a+++a+ +l+g
  Csa07g052310.1  85 YRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFETAEKAALAYDRAAFQLRG 133
                     9******9.**********965...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.15E-2284142IPR016177DNA-binding domain
PROSITE profilePS5103222.66984141IPR001471AP2/ERF domain
SMARTSM003801.5E-3684147IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-3184142IPR001471AP2/ERF domain
PRINTSPR003676.9E-118596IPR001471AP2/ERF domain
PfamPF008471.4E-1385133IPR001471AP2/ERF domain
CDDcd000182.44E-3285143No hitNo description
PRINTSPR003676.9E-11107123IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MAAIDMFTSN KDLYFSPLIE TAPISFHESN ASSGTFNQPK PLGLNQLTQY QIHQIQDQLN  60
HRRSTISNRI RTTSFSPSSK TKNLYRGVRQ RHWGKWVAEI RLPKNRTRLW LGTFETAEKA  120
ALAYDRAAFQ LRGDISKLNF PNLRHEDVNP LPSSVDAKLQ AICKSLRTTE EACSVSDQTE  180
ETCSVSDKTE FLLPKTDHFE TKEFSDVSPR TEKSSSSNMA FLDFWDSEFE KTGSFGLVKI  240
PSVEIDWDSL LRAGEVSFGS FGGQFAISKL SDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-2285141360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g052310.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0071681e-134AC007168.5 Arabidopsis thaliana chromosome 2 clone T26C19 map mi238, complete sequence.
GenBankCP0026851e-134CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010416976.10.0PREDICTED: ethylene-responsive transcription factor ERF056-like
SwissprotQ9SIE41e-117ERF56_ARATH; Ethylene-responsive transcription factor ERF056
TrEMBLR0G1431e-118R0G143_9BRAS; Uncharacterized protein
STRINGXP_010416977.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26802768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22200.11e-109ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]