PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g050320.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 472aa    MW: 51685.4 Da    PI: 5.4176
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g050320.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.91.1e-174393155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    ++ykGVr ++ +g+Wv eIr p   +k++r++lg++ tae Aa+a++aa ++l+g
  Csa07g050320.1 43 KKYKGVRMRS-WGSWVTEIRAP---NKKTRIWLGSYSTAEAAARAYDAALLCLKG 93
                    59*****998.**********9...347************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.15E-1743102No hitNo description
PfamPF008472.1E-114493IPR001471AP2/ERF domain
PROSITE profilePS5103221.98344101IPR001471AP2/ERF domain
SMARTSM003805.7E-3544107IPR001471AP2/ERF domain
SuperFamilySSF541715.17E-1944102IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.3E-3044102IPR001471AP2/ERF domain
PRINTSPR003671.8E-84556IPR001471AP2/ERF domain
PRINTSPR003671.8E-86783IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MVKQELKIQV TTSSISSLSH SSSSSTSSSS KLHHHQSSKN KIKKYKGVRM RSWGSWVTEI  60
RAPNKKTRIW LGSYSTAEAA ARAYDAALLC LKGPKANLNF PHITTNSPFL MNIDEKTLLS  120
PKSIQKVAAQ AANSFSSDPF ASPSDDDRDD GLHHHPSPSS SAASSPPHHN DDDGDLVPLM  180
ESHHHDHDDR IHHHPSPSSS AASSPPDDGG HHNDDDGDMV SLMESLTDYN EHVSLMDPSW  240
YGFDHNEMFF TNRAPFDYSS HLNSSKTTTM DDLIHHHPSP SSSAASSPPD DGGHHNDDDG  300
DLTLLSPKSI QKVAAQAANS FSSDPFASPS DDDRDDGLHH HPSPSSSAAS SPPHHNDDDG  360
DLVPLMESHH HDHDDRIHHH PSPSSSAASS PPDDGGHHND DDGDMVSLME SLTDYNEHVS  420
LMDPSWYGFD HNEMFFTNRA PFDYSSHLNS SKTTTMDDLY DDADIQLWSF T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-14441021473Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g050320.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0107041e-150AC010704.6 Arabidopsis thaliana chromosome 1 BAC T5M16 genomic sequence, complete sequence.
GenBankAY5608431e-150AY560843.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At1g77640) mRNA, complete cds.
GenBankBT0126291e-150BT012629.1 Arabidopsis thaliana At1g77640 mRNA, complete cds.
GenBankCP0026841e-150CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010416718.11e-120PREDICTED: ethylene-responsive transcription factor ERF013-like isoform X1
RefseqXP_010416720.11e-120PREDICTED: ethylene-responsive transcription factor ERF013-like isoform X3
SwissprotQ9CAP41e-66ERF13_ARATH; Ethylene-responsive transcription factor ERF013
TrEMBLR0IFN48e-94R0IFN4_9BRAS; Uncharacterized protein
STRINGXP_010416720.11e-119(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29992767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77640.13e-51ERF family protein