PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g048460.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Trihelix
Protein Properties Length: 579aa    MW: 66181.7 Da    PI: 7.2667
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g048460.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix96.42.6e-3041125187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW++ e+laL+++r+em++++r++ lk+plWee+s+km+e g++rs+k+Ckek+en+ k++k++keg+ ++++++  t+++f++lea
  Csa07g048460.1  41 RWPRPETLALLRIRSEMDKAFRDSTLKAPLWEEISRKMMELGYKRSAKKCKEKFENVYKYHKRTKEGRTGKSEGK--TYRFFEELEA 125
                     8********************************************************************975544..6******985 PP
2trihelix108.83.5e-34398483187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW+k ev aLi++r+++e +++++  k+plWee+s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++kkr + +s+tcpyf+qlea
  Csa07g048460.1 398 RWPKTEVEALIRIRKNLEANYQENGTKGPLWEEISAGMRRLGYNRSAKRCKEKWENINKYFKKVKESNKKR-PLDSKTCPYFHQLEA 483
                     8*********************************************************************8.9************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.04438100IPR001005SANT/Myb domain
CDDcd122038.73E-2540105No hitNo description
PfamPF138372.5E-2040125No hitNo description
PROSITE profilePS500907.0044098IPR017877Myb-like domain
PROSITE profilePS500907.526391455IPR017877Myb-like domain
SMARTSM007179.2E-4395457IPR001005SANT/Myb domain
CDDcd122037.76E-26397462No hitNo description
PfamPF138377.2E-24397484No hitNo description
Gene3DG3DSA:1.10.10.603.1E-4397454IPR009057Homeodomain-like
SuperFamilySSF466899.5E-5398489IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 579 aa     Download sequence    Send to blast
MSGNSSGPLE SSGGGVGGSG EEEKDMKMEE TGEGAGGGGN RWPRPETLAL LRIRSEMDKA  60
FRDSTLKAPL WEEISRKMME LGYKRSAKKC KEKFENVYKY HKRTKEGRTG KSEGKTYRFF  120
EELEAFETLN SYQHEPESQP AKSSAAVATA AITTSLIPWI ISNNPSTEKS SLPLKHQHQA  180
SVQPITTNPT FLAKQPSATM PFPFYSNNNT TTVSQPPISN DLMNNVSSLH LFSSSTSSST  240
ASDEEEDHHQ GKRSRKRRKY WKGLFTKLTK ELMDKQEKMQ KRLLETLENR EKERISREEA  300
WRVQEIARIN REHETLIHER SNAAAKDAAI ISFLHKISGG QQQQPQQQNH HKPAQRKQYQ  360
SDHSITFESK EPRPVLLDTT MKMGNYDTNH SISPSSSRWP KTEVEALIRI RKNLEANYQE  420
NGTKGPLWEE ISAGMRRLGY NRSAKRCKEK WENINKYFKK VKESNKKRPL DSKTCPYFHQ  480
LEALYNERNK SGAMPLPLPL PQMVTPQRQL LLSQENQTEF ETDQRDKVGD KEDDEEGESE  540
EDEYDEEEEG EGDNETSEFE TVLKKTSSPM DINNNLFT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18391KRSAKKCKE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g048460.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0871170.0AY087117.1 Arabidopsis thaliana clone 3190 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010416613.10.0PREDICTED: trihelix transcription factor GT-2
SwissprotQ391170.0TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A178W7Z20.0A0A178W7Z2_ARATH; GT2
STRINGXP_010416613.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59952847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.20.0Trihelix family protein