PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g047980.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 338aa    MW: 37987.7 Da    PI: 6.3444
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g047980.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.93.8e-53221501129
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdeel+++yL+ k+ +  l+   +i+evd++++ePw+Lp+++k +ekewyf+s rd+ky+tg r+nrat++gyWkatgkdkev++ 
  Csa07g047980.1  22 LPPGFRFHPTDEELITFYLASKIFHGGLSG-IHISEVDLNRCEPWELPEMAKMGEKEWYFYSLRDRKYPTGLRTNRATTAGYWKATGKDKEVYAG 115
                     79*************************999.78***************988999****************************************8 PP

             NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrle 129
                      +g lvg+kktLvfykgrap+g kt+Wvmheyrle
  Csa07g047980.1 116 gGGPLVGMKKTLVFYKGRAPRGLKTKWVMHEYRLE 150
                     66677****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.85E-6317171IPR003441NAC domain
PROSITE profilePS5100558.922171IPR003441NAC domain
PfamPF023659.9E-2723149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010014Biological Processmeristem initiation
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MMLAVEDVLS ELAGEEKNER GLPPGFRFHP TDEELITFYL ASKIFHGGLS GIHISEVDLN  60
RCEPWELPEM AKMGEKEWYF YSLRDRKYPT GLRTNRATTA GYWKATGKDK EVYAGGGGPL  120
VGMKKTLVFY KGRAPRGLKT KWVMHEYRLE TDLSHRHTCK EEWVICRVFN KSGDRKNVGI  180
HNQISYLHNN SLSTTHHHDA LPLLLEPSDK TLTNFPSLLY DDPHQNYNKN FIHGSSGHNL  240
DELKALINPV VSQLNGIIFS PGNNNNNNND EDDFGFNLGV KTEPSSNGAI NNNELDVRDY  300
LENPLFQEAS YGLLGLSSSP GPLHMLLDSP CPLGFQL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A4e-492217220169NAC domain-containing protein 19
3swm_B4e-492217220169NAC domain-containing protein 19
3swm_C4e-492217220169NAC domain-containing protein 19
3swm_D4e-492217220169NAC domain-containing protein 19
3swp_A4e-492217220169NAC domain-containing protein 19
3swp_B4e-492217220169NAC domain-containing protein 19
3swp_C4e-492217220169NAC domain-containing protein 19
3swp_D4e-492217220169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00241DAPTransfer from AT1G76420Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g047980.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010416562.10.0PREDICTED: protein CUP-SHAPED COTYLEDON 3-like
SwissprotQ9S8510.0NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBLR0ID000.0R0ID00_9BRAS; Uncharacterized protein
STRINGXP_010416562.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40028174
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.10.0NAC family protein
Publications ? help Back to Top
  1. Chen C, et al.
    Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.).
    J. Exp. Bot., 2014. 65(17): p. 4943-58
    [PMID:24962999]
  2. Gonçalves B, et al.
    A conserved role for CUP-SHAPED COTYLEDON genes during ovule development.
    Plant J., 2015. 83(4): p. 732-42
    [PMID:26119568]
  3. Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D
    SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis.
    Plant J., 2017. 90(3): p. 435-446
    [PMID:28161901]
  4. Espinosa-Ruiz A, et al.
    TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana.
    Development, 2017. 144(9): p. 1619-1628
    [PMID:28320734]
  5. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]