![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa07g047890.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | Nin-like | ||||||||
Protein Properties | Length: 825aa MW: 92092.4 Da PI: 6.2172 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 93.7 | 1.3e-29 | 554 | 605 | 1 | 52 |
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+i+l++l++yF++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ Csa07g047890.1 554 AEKNITLDVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGIQRWPSRKIKKV 605 589***********************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.2 | 544 | 625 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.3E-25 | 557 | 605 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 1.01E-22 | 715 | 812 | No hit | No description |
SMART | SM00666 | 1.4E-23 | 726 | 809 | IPR000270 | PB1 domain |
PROSITE profile | PS51745 | 25.729 | 726 | 809 | IPR000270 | PB1 domain |
Gene3D | G3DSA:3.10.20.240 | 2.5E-19 | 727 | 806 | No hit | No description |
Pfam | PF00564 | 3.7E-17 | 728 | 807 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 825 aa Download sequence Send to blast |
MENNSLPLDP AMDSSFMDGL LLEGCWLETT DAASELFNFS PSTSVTPFDP SSFMWSPTQQ 60 DTPPAAICSS SSLSQTMYGQ DCAERSSLED QGRDLSSFNR RWWIGPSGHG SSVMERLVQA 120 VAHIKDYTSE RGSLIQLWVP VDRGGKRVLT TKEQPFSHDP MCQRLAHYRE ISVNYQFSTE 180 QEDSGSNSND LVGLPGRVFL GKVPEWTPDV RFFKNEEYPR VQHAQDCDVR GTLAIPVFEQ 240 GSQNCLGVIE VVMTTQMVKL SPDLESICRA LQAVDLRSTG VPIPPSLKGP DFSYQAALPE 300 IRNLLRCACE THKLPLAQTW VSCLKQSKTG CRHNDENYIH CVSTIDDACY VGDPTVREFH 360 EACSEHHLLK GQGVVGEAFL TNGPCFSSDV SSYKKSEYPL SHHATMFGLH GTVAIRLRCI 420 HTGSADFVLE FFLPKSCRDI EEQRKMLNAL STIMAHVPRS LRTVTEKELE EEGNPMAREV 480 IERRVTLPKI ENPSEVQESN SNPQNAGLVF DGGTTEMGEL GSDYGKGISV NEKSTFSSAT 540 GGFSRITEKK RTKAEKNITL DVLRQYFAGS LKDAAKSIGV CPTTLKRICR QHGIQRWPSR 600 KIKKVGHSLQ KIQRVIDSVE GVSGHHLPIG SFYANFPNLA SSPEASSLQQ QQSKRTTFLF 660 SSTSQPTKSP GSSCSYSSSC SSETQVNKED PTDKTRQETT TLSRSFKERQ TTTHLSPSTS 720 SQEDDLLRIK VTYEEEKIRF RMRNSHRLND LLWEIAKRFS IEDVSRYDLK YLDEDNEWVL 780 LRCDDDVDEC VDVCRSFPGQ TIKLLLQLSS QYLSERSSAS GCPS* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa07g047890.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB493537 | 0.0 | AB493537.1 Arabidopsis thaliana At1g76350 mRNA for hypothetical protein, partial cds, clone: RAAt1g76350. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010416548.1 | 0.0 | PREDICTED: protein NLP5 | ||||
Refseq | XP_010416549.1 | 0.0 | PREDICTED: protein NLP5 | ||||
Swissprot | Q9SFW8 | 0.0 | NLP5_ARATH; Protein NLP5 | ||||
TrEMBL | R0I6G0 | 0.0 | R0I6G0_9BRAS; Uncharacterized protein | ||||
STRING | XP_010416548.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3461 | 26 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G76350.1 | 0.0 | Nin-like family protein |