PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g046810.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 454aa    MW: 48774.4 Da    PI: 6.9838
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g046810.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.38.5e-0626381527
                    -TTTTT-SS-SSS CS
         zf-CCCH 15 CkyGdrCkFaHgp 27
                    C+yG++C+F H++
  Csa07g046810.1 26 CRYGENCRFLHPQ 38
                    ***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501038.981739IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005635Cellular Componentnuclear envelope
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MMDKRKEDDE ISCIYVYAPE YVPQCCRYGE NCRFLHPQQA KPNNPFGFGS QQQQQQPQQQ  60
KSSNPFGFVV QSGGASSRPN QFQPFENTWS RTGSTPSAAG GGASAQQTTG GKQTQSTDHK  120
CTDPAACKRV MQDDFKNERP MWKLTCYGHW KYFPCDVTGD ISYEELRALA YDEAKRGIPL  180
QSIVERERNL QNSKIAEFEN FLRNPYKGSV TANQSPFAAP TPSIFPPTNQ INSSPPAFAG  240
FNQQAAFPNT NAGGLSSSGP LNAFASFSHQ SNNQQTTFPN TNAGGVSSSG PPNLFASFNQ  300
QSNNQQAAFP NTNAGGVSSS GPSNAFASFN KQPNAFGVNT PQPIPTGPSG FQTHPSVAFK  360
PASFGPGPGL PTTPQNNNIF GRPTPTPAPN TSQTAFNFNV PVASFTAPAV DTTNTSSGTE  420
LQIQGDPVDS SIWLKEKWNP GEIPEQAPPD AFV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g046810.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010416410.10.0PREDICTED: zinc finger CCCH domain-containing protein 16-like isoform X1
SwissprotQ9FWS30.0C3H16_ARATH; Zinc finger CCCH domain-containing protein 16
TrEMBLD7KSN00.0D7KSN0_ARALL; Zinc finger (CCCH-type) family protein
STRINGXP_010416410.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM107242731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.10.0C3H family protein