PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa07g040980.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

EIL

Protein Properties

Length: 273aa MW: 31515.1 Da PI: 9.3814

Description

EIL family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa07g040980.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	EIN3	176.6	2.6e-54	26	147	1	119
XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS EIN3 1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsLraWW 95 e+l++rmwkd+++lkr+ker+k + a ++ +k+++qa+rkkmsraQDgiLkYMlk mevc+++GfvYgiipekgkpv+g+sd++raWW Csa07g040980.1 26 EDLERRMWKDRVRLKRIKERQKVGS--QGA-QTKEMPKKISDQAQRKKMSRAQDGILKYMLKLMEVCKVRGFVYGIIPEKGKPVSGSSDNIRAWW 117 89***************999754..444.5567789***************************************************** PP XXXXXXXXXXXXXXXXX......XXXXXXX CS EIN3 96 kekvefdrngpaaisky......qaknlil 119 kekv+fd+ngpaai+ky ++++l++ Csa07g040980.1 118 KEKVKFDKNGPAAIAKYeeemenEPDDLAS 147 ***************7666555555555 PP
2	EIN3	173.5	2.3e-53	163	272	1	113
XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS EIN3 1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsLraWW 95 e+l++rmwkd+++lkr+ker+k + a ++ +k+++qa+rkkmsraQDgiLkYMlk mevc+++GfvYgiipekgkpv+g+sd++raWW Csa07g040980.1 163 EDLERRMWKDRVRLKRIKERQKVGS--QGA-QTKEMPKKISDQAQRKKMSRAQDGILKYMLKLMEVCKVRGFVYGIIPEKGKPVSGSSDNIRAWW 254 89***************999754..444.5567789***************************************************** PP XXXXXXXXXXXXXXXXXX CS EIN3 96 kekvefdrngpaaiskyq 113 kekv+fd+ngpaai+ky+ Csa07g040980.1 255 KEKVKFDKNGPAAIAKYE 272 **************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04873	1.7E-54	26	139	No hit	No description
Pfam	PF04873	2.7E-53	163	272	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MENEPDDLAS DNVAEIDVSD EEIDAEDLER RMWKDRVRLK RIKERQKVGS QGAQTKEMPK 60 KISDQAQRKK MSRAQDGILK YMLKLMEVCK VRGFVYGIIP EKGKPVSGSS DNIRAWWKEK 120 VKFDKNGPAA IAKYEEEMEN EPDDLASDNV AEIDVSDEEI DAEDLERRMW KDRVRLKRIK 180 ERQKVGSQGA QTKEMPKKIS DQAQRKKMSR AQDGILKYML KLMEVCKVRG FVYGIIPEKG 240 KPVSGSSDNI RAWWKEKVKF DKNGPAAIAK YEE

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in the ethylene response pathway. {ECO:0000269\|PubMed:9215635, ECO:0000269\|PubMed:9851977}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa07g040980.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC012679	1e-161	AC012679.5 Arabidopsis thaliana chromosome 1 BAC F25P22 genomic sequence, complete sequence.
GenBank	AF004215	1e-161	AF004215.1 Arabidopsis thaliana ethylene-insensitive3-like3 (EIL3) mRNA, complete cds.
GenBank	AY070044	1e-161	AY070044.1 Arabidopsis thaliana putative ethylene-insensitive protein EIL3 (At1g73730) mRNA, complete cds.
GenBank	AY133839	1e-161	AY133839.1 Arabidopsis thaliana clone U18784 putative ethylene-insensitive protein EIL3 (At1g73730) mRNA, complete cds.
GenBank	CP002684	1e-161	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006302057.1	2e-88	ETHYLENE INSENSITIVE 3-like 3 protein
Refseq	XP_010428309.1	2e-88	PREDICTED: ETHYLENE INSENSITIVE 3-like 3 protein
Swissprot	O23116	2e-87	EIL3_ARATH; ETHYLENE INSENSITIVE 3-like 3 protein
TrEMBL	R0IA25	4e-87	R0IA25_9BRAS; Uncharacterized protein
STRING	Cagra.0876s0005.1.p	7e-88	(Capsella grandiflora)
STRING	XP_006302057.1	7e-88	(Capsella rubella)
STRING	XP_010428309.1	6e-88	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM32322	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G73730.1	1e-89	ETHYLENE-INSENSITIVE3-like 3

Publications ? help Back to Top
Frerigmann H,Gigolashvili T Update on the role of R2R3-MYBs in the regulation of glucosinolates upon sulfur deficiency. Front Plant Sci, 2014. 5: p. 626 [PMID:25426131] Zheng ZL,Zhang B,Leustek T Transceptors at the boundary of nutrient transporters and receptors: a new role for Arabidopsis SULTR1;2 in sulfur sensing. Front Plant Sci, 2014. 5: p. 710 [PMID:25566284] Panda SK,Sunkar R Nutrient- and other stress-responsive microRNAs in plants: Role for thiol-based redox signaling. Plant Signal Behav, 2015. 10(4): p. e1010916 [PMID:25912823] Wawrzyńska A,Sirko A EIN3 interferes with the sulfur deficiency signaling in Arabidopsis thaliana through direct interaction with the SLIM1 transcription factor. Plant Sci., 2016. 253: p. 50-57 [PMID:27968996]