PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa07g040980.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | EIL | ||||||||
Protein Properties | Length: 273aa MW: 31515.1 Da PI: 9.3814 | ||||||||
Description | EIL family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | EIN3 | 176.6 | 2.6e-54 | 26 | 147 | 1 | 119 |
XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS EIN3 1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsLraWW 95 e+l++rmwkd+++lkr+ker+k + a ++ +k+++qa+rkkmsraQDgiLkYMlk mevc+++GfvYgiipekgkpv+g+sd++raWW Csa07g040980.1 26 EDLERRMWKDRVRLKRIKERQKVGS--QGA-QTKEMPKKISDQAQRKKMSRAQDGILKYMLKLMEVCKVRGFVYGIIPEKGKPVSGSSDNIRAWW 117 89*****************999754..444.5567789********************************************************* PP XXXXXXXXXXXXXXXXX......XXXXXXX CS EIN3 96 kekvefdrngpaaisky......qaknlil 119 kekv+fd+ngpaai+ky ++++l++ Csa07g040980.1 118 KEKVKFDKNGPAAIAKYeeemenEPDDLAS 147 *****************7666555555555 PP | |||||||
2 | EIN3 | 173.5 | 2.3e-53 | 163 | 272 | 1 | 113 |
XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS EIN3 1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsLraWW 95 e+l++rmwkd+++lkr+ker+k + a ++ +k+++qa+rkkmsraQDgiLkYMlk mevc+++GfvYgiipekgkpv+g+sd++raWW Csa07g040980.1 163 EDLERRMWKDRVRLKRIKERQKVGS--QGA-QTKEMPKKISDQAQRKKMSRAQDGILKYMLKLMEVCKVRGFVYGIIPEKGKPVSGSSDNIRAWW 254 89*****************999754..444.5567789********************************************************* PP XXXXXXXXXXXXXXXXXX CS EIN3 96 kekvefdrngpaaiskyq 113 kekv+fd+ngpaai+ky+ Csa07g040980.1 255 KEKVKFDKNGPAAIAKYE 272 ****************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04873 | 1.7E-54 | 26 | 139 | No hit | No description |
Pfam | PF04873 | 2.7E-53 | 163 | 272 | No hit | No description |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 273 aa Download sequence Send to blast |
MENEPDDLAS DNVAEIDVSD EEIDAEDLER RMWKDRVRLK RIKERQKVGS QGAQTKEMPK 60 KISDQAQRKK MSRAQDGILK YMLKLMEVCK VRGFVYGIIP EKGKPVSGSS DNIRAWWKEK 120 VKFDKNGPAA IAKYEEEMEN EPDDLASDNV AEIDVSDEEI DAEDLERRMW KDRVRLKRIK 180 ERQKVGSQGA QTKEMPKKIS DQAQRKKMSR AQDGILKYML KLMEVCKVRG FVYGIIPEKG 240 KPVSGSSDNI RAWWKEKVKF DKNGPAAIAK YEE |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that may be involved in the ethylene response pathway. {ECO:0000269|PubMed:9215635, ECO:0000269|PubMed:9851977}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa07g040980.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC012679 | 1e-161 | AC012679.5 Arabidopsis thaliana chromosome 1 BAC F25P22 genomic sequence, complete sequence. | |||
GenBank | AF004215 | 1e-161 | AF004215.1 Arabidopsis thaliana ethylene-insensitive3-like3 (EIL3) mRNA, complete cds. | |||
GenBank | AY070044 | 1e-161 | AY070044.1 Arabidopsis thaliana putative ethylene-insensitive protein EIL3 (At1g73730) mRNA, complete cds. | |||
GenBank | AY133839 | 1e-161 | AY133839.1 Arabidopsis thaliana clone U18784 putative ethylene-insensitive protein EIL3 (At1g73730) mRNA, complete cds. | |||
GenBank | CP002684 | 1e-161 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006302057.1 | 2e-88 | ETHYLENE INSENSITIVE 3-like 3 protein | ||||
Refseq | XP_010428309.1 | 2e-88 | PREDICTED: ETHYLENE INSENSITIVE 3-like 3 protein | ||||
Swissprot | O23116 | 2e-87 | EIL3_ARATH; ETHYLENE INSENSITIVE 3-like 3 protein | ||||
TrEMBL | R0IA25 | 4e-87 | R0IA25_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.0876s0005.1.p | 7e-88 | (Capsella grandiflora) | ||||
STRING | XP_006302057.1 | 7e-88 | (Capsella rubella) | ||||
STRING | XP_010428309.1 | 6e-88 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM32322 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G73730.1 | 1e-89 | ETHYLENE-INSENSITIVE3-like 3 |
Publications ? help Back to Top | |||
---|---|---|---|
|