PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g039020.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 404aa    MW: 45731.3 Da    PI: 7.8625
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g039020.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.000552042123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y C++Cg s s k++ ++Hi++H
  Csa07g039020.1 20 YLCQYCGISRSKKYLITSHIKSH 42
                    56********************6 PP
2zf-C2H220.21.6e-066688123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C+ Cg  F+ + +Lk+H+++H
  Csa07g039020.1 66 HTCQECGAEFKKPAHLKQHMQSH 88
                    79*******************99 PP
3zf-C2H214.69.3e-0594118123
                     EEET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                     + C   dC  s++rk++L+rH+ tH
  Csa07g039020.1  94 FACYvdDCAASYRRKDHLNRHLLTH 118
                     6688889****************99 PP
4zf-C2H221.18e-07206230123
                     EEET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                     ++C+   Cgk F+  s+L++H+ +H
  Csa07g039020.1 206 HVCKeiGCGKAFKYLSQLQKHQDSH 230
                     79********************998 PP
5zf-C2H220.71.1e-06296321123
                     EEET..TTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                     +kC+   C+ +Fs  snL++H++  H
  Csa07g039020.1 296 FKCEveGCSSTFSKASNLQKHMKAvH 321
                     89********************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355162042IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.0E-76693IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00156688IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.4436693IPR007087Zinc finger, C2H2
PROSITE patternPS0002806888IPR007087Zinc finger, C2H2
SuperFamilySSF576671.28E-1075127No hitNo description
SMARTSM003550.2494118IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.0E-994120IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.86894123IPR007087Zinc finger, C2H2
PROSITE patternPS00028096118IPR007087Zinc finger, C2H2
SuperFamilySSF576678.53E-5121149No hitNo description
SMARTSM003550.74123148IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.66123153IPR007087Zinc finger, C2H2
PROSITE patternPS000280125148IPR007087Zinc finger, C2H2
SuperFamilySSF576672.1E-7201230No hitNo description
Gene3DG3DSA:3.30.160.601.6E-8202230IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0038206230IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.72206235IPR007087Zinc finger, C2H2
PROSITE patternPS000280208230IPR007087Zinc finger, C2H2
SMARTSM003550.97238263IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.6E-4240261IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280240263IPR007087Zinc finger, C2H2
SMARTSM0035522266287IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.11E-9277331No hitNo description
Gene3DG3DSA:3.30.160.603.0E-8277318IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003551.0E-4296321IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.152296326IPR007087Zinc finger, C2H2
PROSITE patternPS000280298321IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.0E-4320347IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003558.1327353IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280329353IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MVEEANVDVK ASKKKDIRNY LCQYCGISRS KKYLITSHIK SHHQMELEEE RDDMACEVEQ  60
ETSSKHTCQE CGAEFKKPAH LKQHMQSHLL ERPFACYVDD CAASYRRKDH LNRHLLTHKG  120
KLFKCPMENC KSEFSVQGNV GRHVKKYHSN DDNDKDNTGN VDSGKDKSGS GGGDKENIAN  180
GDSANKDNTC NGDSQPSECS TGQKPHVCKE IGCGKAFKYL SQLQKHQDSH VKLDSVEAFC  240
SEPGCMKYFT NEECLKAHIR SCHQHINCEI CGSKHLKKNI KRHLRTHEED SSPGEFKCEV  300
EGCSSTFSKA SNLQKHMKAV HEDIRPFVCG FPGCGMRFAY KHVRNNHENS GCHIYTCGDF  360
VETDEDFTSR PRGGLKRKQV TAEMMVRKRV MPPRFDSEGH ETC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wjq_D4e-16183567284Zinc finger protein 568
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g039020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ6304780.0AJ630478.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At1g72050D.
GenBankAY0542250.0AY054225.1 Arabidopsis thaliana At1g72050/F28P5_6 mRNA, complete cds.
GenBankAY0660420.0AY066042.1 Arabidopsis thaliana At1g72050/F28P5_6 mRNA, complete cds.
GenBankAY1866100.0AY186610.1 Arabidopsis thaliana transcription factor IIIA (TFIIIA) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010415924.10.0PREDICTED: transcription factor IIIA
SwissprotQ84MZ40.0TF3A_ARATH; Transcription factor IIIA
TrEMBLR0IDC60.0R0IDC6_9BRAS; Uncharacterized protein
STRINGXP_010415924.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47142852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.20.0transcription factor IIIA