PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g036270.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MIKC_MADS
Protein Properties Length: 337aa    MW: 38222.6 Da    PI: 7.1154
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g036270.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF64.31.3e-201353545
                    SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
          SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                    n   rq t++kR++gi+KKA+ELS+LCd++v +++fs+tgk
  Csa07g036270.1 13 NMNARQSTYAKRKHGIMKKAKELSILCDIDVVLLMFSPTGK 53
                    6778***********************************98 PP
2K-box15.19.7e-071421814786
           K-box  47 slkeLqqLeqqLekslkkiRskKnellleqieelqkkeke 86 
                     ++ +LqqLe+ L  sl +i ++K  +   q ++l   e +
  Csa07g036270.1 142 NVDDLQQLEDSLRLSLAQISARKASIPQHQQQQLMSSECK 181
                     689********************99888877776655544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.7E-26160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.189153IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.92E-23292IPR002100Transcription factor, MADS-box
CDDcd001205.95E-21253No hitNo description
PRINTSPR004041.8E-14323IPR002100Transcription factor, MADS-box
PfamPF003196.4E-181354IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-142338IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-143859IPR002100Transcription factor, MADS-box
PROSITE profilePS512976.686106200IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MGRVKLKIMK LRNMNARQST YAKRKHGIMK KAKELSILCD IDVVLLMFSP TGKASLCLGK  60
NSIGEVIAKF AQLTPQERAK RKLENLEALK KMFFKLDHDV DISEFLDRST PTVEVLSEKV  120
RFLRTQLSDI HTRLSCWTNL DNVDDLQQLE DSLRLSLAQI SARKASIPQH QQQQLMSSEC  180
KNQTEIDIDF GMEMEQQLEN FSWVRTTGEN MNVPIKEENP NLQVHQMYRD ITSSASSSLG  240
NYSGLSTPKL ETGSIPGIPA DPSLQFGNPS FLNDQKLQKL AEWNLLGSPA DYYFSQVLEA  300
SHKPQLGGNK YNWTSPETLP YVAIFDDPLY FWPSEK*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g036270.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1150130.0AB115013.1 Arabidopsis thaliana At1g69540 mRNA for MADS-box protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010415606.10.0PREDICTED: agamous-like MADS-box protein AGL30 isoform X3
SwissprotQ1PFA48e-75AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBLA0A178WKN70.0A0A178WKN7_ARATH; AGL94
STRINGXP_010415603.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM149561620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69540.10.0AGAMOUS-like 94
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]