PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

SBP

Protein Properties

Length: 412aa MW: 46215.1 Da PI: 6.9209

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa07g035820.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	134.3	3.9e-42	130	205	2	77
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cqv gC+ dls+ k+yh+rh+vC++hsk++vv+v+gleqrfCqqCsrfh lsefD++krsCrrrLa+hnerrrk++ Csa07g035820.1 130 CQVYGCNLDLSSSKDYHKRHRVCDTHSKTSVVIVNGLEQRFCQQCSRFHFLSEFDDGKRSCRRRLAGHNERRRKPA 205 **************************************************************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	5.3E-33	125	191	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.735	127	204	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.31E-39	128	207	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	3.5E-32	130	203	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence Send to blast
MDSWSYGRSV FLGNGTLLPS DSFAENRNFG QSLSNGLEND HHHHVLISDL AGDSNGFSAV 60 SISKVVPSNL LHEEEEEKQQ SSSSSKLSSQ ELSRIDFKLR SFLDLGNDDD TSSRGFAPRA 120 SNLCSQKPLC QVYGCNLDLS SSKDYHKRHR VCDTHSKTSV VIVNGLEQRF CQQCSRFHFL 180 SEFDDGKRSC RRRLAGHNER RRKPAFYYLP GKRHKLLRTS QGVVGNKFLE NSSVNDFSLV 240 LPEEFPGTFL YRVIDEHDHH ASSRLVSFKD EPTCSMFPAV GQNSSRIYES KPAVHSPEVS 300 SIWDLHESAS RSTCALSLLS AQSQQQHIPE TPNTTFSITQ PNHSPVDFNQ MERLWIDPGK 360 TNPAGSSSCT VKGSSTVDLL QLSSHLQRIE QQRNFTDDVK QEYNELYFTG S*

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence Send to blast

MDSWSYGRSV FLGNGTLLPS DSFAENRNFG QSLSNGLEND HHHHVLISDL AGDSNGFSAV  60
SISKVVPSNL LHEEEEEKQQ SSSSSKLSSQ ELSRIDFKLR SFLDLGNDDD TSSRGFAPRA  120
SNLCSQKPLC QVYGCNLDLS SSKDYHKRHR VCDTHSKTSV VIVNGLEQRF CQQCSRFHFL  180
SEFDDGKRSC RRRLAGHNER RRKPAFYYLP GKRHKLLRTS QGVVGNKFLE NSSVNDFSLV  240
LPEEFPGTFL YRVIDEHDHH ASSRLVSFKD EPTCSMFPAV GQNSSRIYES KPAVHSPEVS  300
SIWDLHESAS RSTCALSLLS AQSQQQHIPE TPNTTFSITQ PNHSPVDFNQ MERLWIDPGK  360
TNPAGSSSCT VKGSSTVDLL QLSSHLQRIE QQRNFTDDVK QEYNELYFTG S*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	7e-30	129	203	10	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa07g035820.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305\|PubMed:12202040}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF370612	0.0	AF370612.1 Arabidopsis thaliana similar to squamosa-promoter binding protein 1 isolog gi\|1707009 (F4N2.13) mRNA, complete cds.
GenBank	AJ011643	0.0	AJ011643.1 Arabidopsis thaliana (ecotype Columbia) mRNA for squamosa promoter binding protein-like 6.
GenBank	AK227964	0.0	AK227964.1 Arabidopsis thaliana mRNA for squamosa promoter binding protein-like 6, complete cds, clone: RAFL14-51-E10.
GenBank	BT006436	0.0	BT006436.1 Arabidopsis thaliana At1g69170 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010415541.1	0.0	PREDICTED: squamosa promoter-binding-like protein 6 isoform X1
Refseq	XP_010415542.1	0.0	PREDICTED: squamosa promoter-binding-like protein 6 isoform X2
Refseq	XP_010415543.1	0.0	PREDICTED: squamosa promoter-binding-like protein 6 isoform X3
Refseq	XP_010415544.1	0.0	PREDICTED: squamosa promoter-binding-like protein 6 isoform X4
Refseq	XP_010415546.1	0.0	PREDICTED: squamosa promoter-binding-like protein 6 isoform X4
Swissprot	Q94JW8	0.0	SPL6_ARATH; Squamosa promoter-binding-like protein 6
TrEMBL	R0IA10	0.0	R0IA10_9BRAS; Uncharacterized protein
STRING	XP_010415543.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9275	24	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69170.1	0.0	SBP family protein

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Xu M, et al. Developmental Functions of miR156-Regulated SQUAMOSA PROMOTER BINDING PROTEIN-LIKE (SPL) Genes in Arabidopsis thaliana. PLoS Genet., 2016. 12(8): p. e1006263 [PMID:27541584]