PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g034590.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family TCP
Protein Properties Length: 481aa    MW: 54368.1 Da    PI: 6.7533
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g034590.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP138.84.6e-432313593134
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaak 96 
                     +k+drhski+T++g+RdRR+Rls+++a+rfFdLqd+LGfdk+sktieWL+ ++k++ik+l ++ + s+     +++++ +++  ++++ +  + k
  Csa07g034590.1 231 KKRDRHSKICTAQGPRDRRMRLSLQIARRFFDLQDMLGFDKASKTIEWLFSKSKASIKQLKESAAASE--GgGDAEHVPANG--KEKDDQILKVK 321
                     79*************************************************************44444..323334444444..33344444557 PP

             TCP  97 skksqksaasalnlakesrakarararertrekmrikn 134
                      +k+++++ + + ++kesr++ar+rarert  km+++ 
  Csa07g034590.1 322 VSKRRTKTMESSCKMKESRERARKRARERTMTKMKMRF 359
                     7777777777799999*******************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.9E-35231357IPR005333Transcription factor, TCP
PROSITE profilePS5136936.3232290IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.384337354IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MFPSLDTNGY DLFDPFSPHQ ATMLPSFTTH IQSPSSHHHF PLPSFPFSPD FLDNVDESFL  60
LSQFLLQEQD AAANVFESPR KVCKKLEKKK KNEECVEDTT SETKGKKKIL FLLPVSLFNL  120
MFPSLDTNGY DLFDPFSPHQ ATMLPSFTTH IQSPSSHHHF PLPSFPFSPD FLDNVDESFL  180
LSQFLLQEQD AAANVFESPR KDCKKLEKKK KNEECVEDTT SETVPRRRTV KKRDRHSKIC  240
TAQGPRDRRM RLSLQIARRF FDLQDMLGFD KASKTIEWLF SKSKASIKQL KESAAASEGG  300
GDAEHVPANG KEKDDQILKV KVSKRRTKTM ESSCKMKESR ERARKRARER TMTKMKMRFS  360
GLTDTSETIS DPHQGTRDIK ITNGEQAIEG KSQEQERSTN VNMVEYQMDS VSIIEKFLGL  420
TSDSSSSSIF GDSEESNTSL SSISVPGIVA PNEHNTASIA SVDEETNPIS SFSLYDYLCY  480
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1339349RERARKRARER
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that prevents axillary bud outgrowth. May also delay early axillary bud development. Probably involved in the auxin-induced control of apical dominance. {ECO:0000269|PubMed:17307924}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g034590.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed transiently after shoot apical meristem (SAM) decapitation (release from apical dominance). {ECO:0000269|PubMed:17307924}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010415518.10.0PREDICTED: transcription factor TCP12
SwissprotA0AQW41e-169TCP12_ARATH; Transcription factor TCP12
TrEMBLR0IEY80.0R0IEY8_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010415518.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM116322533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.11e-108TCP domain protein 12