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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa07g034360.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | G2-like | ||||||||
Protein Properties | Length: 356aa MW: 39597.3 Da PI: 6.8478 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 101.6 | 5e-32 | 216 | 271 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rF++a++qLGGs++AtPk+i+++mkv+gLt+++vkSHLQkYRl+ Csa07g034360.1 216 KQRRCWSPELHRRFLNALQQLGGSHVATPKQIRDHMKVDGLTNDEVKSHLQKYRLH 271 79****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.61E-17 | 213 | 274 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.821 | 213 | 273 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.0E-28 | 214 | 274 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.1E-27 | 216 | 271 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 5.6E-8 | 218 | 269 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0055062 | Biological Process | phosphate ion homeostasis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 356 aa Download sequence Send to blast |
MMVEMDYAKK MQKCHEYVEA LEQEQKKIQV FQRELPFCLE LVTQAIEACR KELSGTTISE 60 QQCSEQTTSV CGGPVFEEFI PIKKRSLSQE DEEDEEEDEH ESSPELEQTN KKSDWLRSVQ 120 LWNPSPDLNP KEERVVKRAK VVEVKPKSGA FQPFQKEKKR VLETDLQPAA VKVASSAPAT 180 TTSSTTETGG AKSDLDKVGE EQIQMTQQHQ TQTHRKQRRC WSPELHRRFL NALQQLGGSH 240 VATPKQIRDH MKVDGLTNDE VKSHLQKYRL HTRRPATTVA AQSNGNPQQP QFVVVGGIWV 300 PSPQDFHPPS DAANNGGGVY APVAVAAQSP KRSVERSCNS PGASSSTNTA TTPVS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in phosphate homeostasis. Involved in the regulation of the developmental response of lateral roots, acquisition and/or mobilization of phosphate and expression of a subset of genes involved in phosphate sensing and signaling pathway. Is a target of the transcription factor PHR1. {ECO:0000269|PubMed:27016098}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00218 | DAP | Transfer from AT1G68670 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa07g034360.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced under phosphate deprivation conditions. {ECO:0000269|PubMed:27016098}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010415495.1 | 0.0 | PREDICTED: myb family transcription factor EFM-like | ||||
Swissprot | Q8VZS3 | 0.0 | HHO2_ARATH; Transcription factor HHO2 | ||||
TrEMBL | R0IF32 | 0.0 | R0IF32_9BRAS; Uncharacterized protein | ||||
STRING | XP_010415495.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3491 | 28 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68670.1 | 1e-139 | G2-like family protein |
Publications ? help Back to Top | |||
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