PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g033710.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HSF
Protein Properties Length: 319aa    MW: 35845.5 Da    PI: 5.5717
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g033710.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind107.21.2e-33211132102
                     HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
    HSF_DNA-bind   2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                     Fl+k ye+++d++++++isws +  nsfv+ld++ f+ ++LpkyFkhsnf+SF+RQLn+YgFkkv+ ++         weF+++ F kg+k+ll+
  Csa07g033710.1  21 FLRKCYEMVDDSSTDSIISWStSADNSFVILDTTVFSVQLLPKYFKHSNFSSFIRQLNIYGFKKVDADR---------WEFANDGFVKGQKDLLK 106
                     9********************7778*****************************************999.........***************** PP

                     XXXXXXX CS
    HSF_DNA-bind  96 kikrkks 102
                     ++ r+k+
  Csa07g033710.1 107 NVIRRKN 113
                     *999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.2E-3415106IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467859.93E-3216111IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.3E-5217111IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.5E-2821111IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-182144IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-186072IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406185IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-187385IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MVKSAAADDG GGGGSSSVAP FLRKCYEMVD DSSTDSIISW STSADNSFVI LDTTVFSVQL  60
LPKYFKHSNF SSFIRQLNIY GFKKVDADRW EFANDGFVKG QKDLLKNVIR RKNVQSNEQS  120
KQESKSTTND GQGKLEKSGL WKEVDILKGD KQVLAQELIK VRQYQEITDT KMLNLKDRVQ  180
GMEESQQEML SFLVMVMKNP SLLVQLLQPK EKNSWRKAGE GATIVEEVTD EGDSNSYGLP  240
LVAYQPPSDN GTSKSSSNDL NDFLRNADMM KFCLDENHVP LIIPDLYDDG AWEKLLLLSP  300
SKKKTKKQQE NSLKKGKDD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-241111119129Heat shock factor protein 1
5d5v_B3e-241111119129Heat shock factor protein 1
5d5v_D3e-241111119129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g033710.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ2518660.0AJ251866.1 Arabidopsis thaliana mRNA for heat shock factor 5 (hsf5 gene).
GenBankAY0943960.0AY094396.1 Arabidopsis thaliana At1g67970/T23K23_18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019083238.10.0PREDICTED: heat stress transcription factor A-8-like isoform X1
RefseqXP_019083239.10.0PREDICTED: heat stress transcription factor A-8-like isoform X2
SwissprotQ9S7U50.0HSFA8_ARATH; Heat stress transcription factor A-8
TrEMBLD7KW840.0D7KW84_ARALL; Predicted protein
STRINGXP_010419066.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70452637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67970.11e-167heat shock transcription factor A8