PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa07g032650.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | CAMTA | ||||||||
Protein Properties | Length: 953aa MW: 106123 Da PI: 5.7167 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 168.7 | 8.8e-53 | 11 | 127 | 2 | 117 |
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 ++e ++rwlk+ e+ iL+n+e+ +lt +++rp+sgsl+L+nr+++++frkDG++w+kk+dg+++ E+he+LKvg+ e+l+cyYah+e++ptf+ Csa07g032650.2 11 YQEaQSRWLKPPEVQFILQNHERLTLTDVAPQRPTSGSLFLFNRRVLKFFRKDGHQWRKKRDGRAIAEAHERLKVGNAEALTCYYAHGEHDPTFR 105 56769****************************************************************************************** PP CG-1 96 rrcywlLeeelekivlvhylev 117 rr+yw+L+ e+e+ivlvhy++v Csa07g032650.2 106 RRIYWMLDPEYEHIVLVHYRDV 127 ********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 74.684 | 7 | 133 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 1.5E-80 | 10 | 128 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 4.3E-46 | 13 | 127 | IPR005559 | CG-1 DNA-binding domain |
SuperFamily | SSF81296 | 1.38E-10 | 406 | 475 | IPR014756 | Immunoglobulin E-set |
Gene3D | G3DSA:2.60.40.10 | 2.1E-4 | 407 | 478 | IPR013783 | Immunoglobulin-like fold |
CDD | cd00102 | 0.00199 | 407 | 475 | No hit | No description |
Gene3D | G3DSA:1.25.40.20 | 1.7E-15 | 577 | 676 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 15.565 | 583 | 675 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 5.75E-16 | 585 | 678 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 3.69E-14 | 588 | 675 | No hit | No description |
Pfam | PF12796 | 5.3E-8 | 604 | 676 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.0021 | 616 | 645 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 10.766 | 616 | 648 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 1600 | 655 | 684 | IPR002110 | Ankyrin repeat |
SMART | SM00015 | 26 | 733 | 755 | IPR000048 | IQ motif, EF-hand binding site |
SuperFamily | SSF52540 | 8.5E-8 | 733 | 842 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
PROSITE profile | PS50096 | 8.169 | 734 | 762 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.19 | 736 | 753 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.51 | 790 | 812 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.627 | 791 | 820 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.0041 | 792 | 811 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 2.3E-4 | 813 | 835 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.938 | 814 | 838 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 5.5E-4 | 816 | 835 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 953 aa Download sequence Send to blast |
MQSEYDISTL YQEAQSRWLK PPEVQFILQN HERLTLTDVA PQRPTSGSLF LFNRRVLKFF 60 RKDGHQWRKK RDGRAIAEAH ERLKVGNAEA LTCYYAHGEH DPTFRRRIYW MLDPEYEHIV 120 LVHYRDVSDR EEGYQTSGQV YQFAPVPATQ NASYNHYIGD STDINQHSST SPGTAEVISD 180 LEGSASSSEL GQALKKLKEQ LSIGDEHVDS VVQPYIQPES LDSLQFLECS NDMDHFAQPT 240 TVYQRPENNR LERCYGGNFG AQYHAKNDSN RLERCYGGYV GAQYHSSNLM LVKNDSGGTG 300 GSGDQGSESW KEVLEACALN SEESTPSSAK GLLAGLQEDS NWSYSNQVDQ STLLFPQDLG 360 SFKVPASYSA LLAPENNGEY CRMMDDGELG LPFEQEMSLT VPFLTMQVII IGSFLCSPEE 420 SMWSCMFGST EVPCKIIKEG VIRCEAPACS PGKVNLCITS GDGLSCSEIK EFEYRGKPDT 480 CCLKCSRPQS SDMSTSPDEL IILVRLVQTL LSDRSPEGES NSELGNDKLL KKLKADDDQW 540 THVIAEVING SSSSTTTVGW LLQELLKDKL DAWLSSRFQM SKKEQGIIHM IAGLGFEWAL 600 YPILDHGVSV DFRDINGWSA LHWAARFGSE KMVAALIASG ASAGAVTDPT QQDPNGKTAA 660 SIAASYGHKG IAGYLSEVAL TNHLSSLTLE ETEISKDSAQ VQAEITVNSI SETGPSGSED 720 QLSLEKTLAA VRTAAQAATR IQAAFRAHSF RKRKQREAAM AACLQEYGIY CEDIEGISAM 780 SKRTFGKVKN YHSAALSIQK KYRGYKGRKE FLELRQKVVK IQAHVRGHQI RKHYRVICWA 840 VGILDKVVLR WRRKGVGLRG FRPDIETTED SEDEDILKVF RKQKVDGAVN EAFSRVLSMA 900 NSPEARQQYH RVLKRYCQTK AELGKTETLL GDDDDGLFDI ADMEFDSLFT LP* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa07g032650.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY510026 | 0.0 | AY510026.1 Arabidopsis thaliana ethylene-induced calmodulin-binding protein 4 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010415302.1 | 0.0 | PREDICTED: calmodulin-binding transcription activator 4-like isoform X2 | ||||
Swissprot | Q9FYG2 | 0.0 | CMTA4_ARATH; Calmodulin-binding transcription activator 4 | ||||
TrEMBL | R0GG07 | 0.0 | R0GG07_9BRAS; Uncharacterized protein | ||||
STRING | XP_010415300.1 | 0.0 | (Camelina sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67310.1 | 0.0 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |
Publications ? help Back to Top | |||
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