PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa07g032650.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | CAMTA | ||||||||
Protein Properties | Length: 970aa MW: 108034 Da PI: 5.6451 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 168.7 | 9e-53 | 11 | 127 | 2 | 117 |
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 ++e ++rwlk+ e+ iL+n+e+ +lt +++rp+sgsl+L+nr+++++frkDG++w+kk+dg+++ E+he+LKvg+ e+l+cyYah+e++ptf+ Csa07g032650.1 11 YQEaQSRWLKPPEVQFILQNHERLTLTDVAPQRPTSGSLFLFNRRVLKFFRKDGHQWRKKRDGRAIAEAHERLKVGNAEALTCYYAHGEHDPTFR 105 56769****************************************************************************************** PP CG-1 96 rrcywlLeeelekivlvhylev 117 rr+yw+L+ e+e+ivlvhy++v Csa07g032650.1 106 RRIYWMLDPEYEHIVLVHYRDV 127 ********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 74.684 | 7 | 133 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 1.5E-80 | 10 | 128 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 4.4E-46 | 13 | 127 | IPR005559 | CG-1 DNA-binding domain |
Gene3D | G3DSA:2.60.40.10 | 1.3E-8 | 403 | 492 | IPR013783 | Immunoglobulin-like fold |
SMART | SM00429 | 0.0013 | 406 | 492 | IPR002909 | IPT domain |
CDD | cd00102 | 1.60E-7 | 408 | 492 | No hit | No description |
Pfam | PF01833 | 4.6E-9 | 408 | 491 | IPR002909 | IPT domain |
SuperFamily | SSF81296 | 1.4E-16 | 408 | 492 | IPR014756 | Immunoglobulin E-set |
Gene3D | G3DSA:1.25.40.20 | 1.8E-15 | 594 | 693 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 15.565 | 600 | 692 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 5.91E-16 | 602 | 695 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 3.78E-14 | 605 | 692 | No hit | No description |
Pfam | PF12796 | 5.4E-8 | 623 | 693 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50088 | 10.766 | 633 | 665 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 0.0021 | 633 | 662 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 1600 | 672 | 701 | IPR002110 | Ankyrin repeat |
SMART | SM00015 | 26 | 750 | 772 | IPR000048 | IQ motif, EF-hand binding site |
SuperFamily | SSF52540 | 8.76E-8 | 750 | 859 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
PROSITE profile | PS50096 | 8.169 | 751 | 779 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.19 | 753 | 770 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.51 | 807 | 829 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.627 | 808 | 837 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.0042 | 809 | 828 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 2.3E-4 | 830 | 852 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.938 | 831 | 855 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 5.6E-4 | 833 | 852 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 970 aa Download sequence Send to blast |
MQSEYDISTL YQEAQSRWLK PPEVQFILQN HERLTLTDVA PQRPTSGSLF LFNRRVLKFF 60 RKDGHQWRKK RDGRAIAEAH ERLKVGNAEA LTCYYAHGEH DPTFRRRIYW MLDPEYEHIV 120 LVHYRDVSDR EEGYQTSGQV YQFAPVPATQ NASYNHYIGD STDINQHSST SPGTAEVISD 180 LEGSASSSEL GQALKKLKEQ LSIGDEHVDS VVQPYIQPES LDSLQFLECS NDMDHFAQPT 240 TVYQRPENNR LERCYGGNFG AQYHAKNDSN RLERCYGGYV GAQYHSSNLM LVKNDSGGTG 300 GSGDQGSESW KEVLEACALN SEESTPSSAK GLLAGLQEDS NWSYSNQVDQ STLLFPQDLG 360 SFKVPASYSA LLAPENNGEY CRMMDDGELG LPFEQEMSLT GAYNQKFTIQ DISPEWGFAN 420 ETTKVIIIGS FLCSPEESMW SCMFGSTEVP CKIIKEGVIR CEAPACSPGK VNLCITSGDG 480 LSCSEIKEFE YRGKPDTCCL KCSRPQSSDM STSPDELIIL VRLVQTLLSD RSPEGESNSE 540 LGNDKLLKKL KADDDQWTHV IAEVINGSSS STTTVGWLLQ ELLKDKLDAW LSSRFQMSKK 600 EQGIIHMIAG LGFEWALYPI LDHGVSVDFR DINGWSALHW AARFGSEKMV AALIASGASA 660 GAVTDPTQQD PNGKTAASIA ASYGHKGIAG YLSEVALTNH LSSLTLEETE ISKDSAQVQA 720 EITVNSISET GPSGSEDQLS LEKTLAAVRT AAQAATRIQA AFRAHSFRKR KQREAAMAAC 780 LQEYGIYCED IEGISAMSKR TFGKVKNYHS AALSIQKKYR GYKGRKEFLE LRQKVVKIQA 840 HVRGHQIRKH YRVICWAVGI LDKVVLRWRR KGVGLRGFRP DIETTEDSED EDILKVFRKQ 900 KVDGAVNEAF SRVLSMANSP EARQQYHRVL KRYCQTKAEL GKTETLLGDD DDGLFDIADM 960 EFDSLFTLP* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa07g032650.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY510026 | 0.0 | AY510026.1 Arabidopsis thaliana ethylene-induced calmodulin-binding protein 4 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010415302.1 | 0.0 | PREDICTED: calmodulin-binding transcription activator 4-like isoform X2 | ||||
Swissprot | Q9FYG2 | 0.0 | CMTA4_ARATH; Calmodulin-binding transcription activator 4 | ||||
TrEMBL | R0GG07 | 0.0 | R0GG07_9BRAS; Uncharacterized protein | ||||
STRING | XP_010415300.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6476 | 26 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67310.1 | 0.0 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |
Publications ? help Back to Top | |||
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