PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g032650.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family CAMTA
Protein Properties Length: 970aa    MW: 108034 Da    PI: 5.6451
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g032650.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1168.79e-53111272117
            CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 
                     ++e ++rwlk+ e+  iL+n+e+ +lt  +++rp+sgsl+L+nr+++++frkDG++w+kk+dg+++ E+he+LKvg+ e+l+cyYah+e++ptf+
  Csa07g032650.1  11 YQEaQSRWLKPPEVQFILQNHERLTLTDVAPQRPTSGSLFLFNRRVLKFFRKDGHQWRKKRDGRAIAEAHERLKVGNAEALTCYYAHGEHDPTFR 105
                     56769****************************************************************************************** PP

            CG-1  96 rrcywlLeeelekivlvhylev 117
                     rr+yw+L+ e+e+ivlvhy++v
  Csa07g032650.1 106 RRIYWMLDPEYEHIVLVHYRDV 127
                     ********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143774.6847133IPR005559CG-1 DNA-binding domain
SMARTSM010761.5E-8010128IPR005559CG-1 DNA-binding domain
PfamPF038594.4E-4613127IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.101.3E-8403492IPR013783Immunoglobulin-like fold
SMARTSM004290.0013406492IPR002909IPT domain
CDDcd001021.60E-7408492No hitNo description
PfamPF018334.6E-9408491IPR002909IPT domain
SuperFamilySSF812961.4E-16408492IPR014756Immunoglobulin E-set
Gene3DG3DSA:1.25.40.201.8E-15594693IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.565600692IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484035.91E-16602695IPR020683Ankyrin repeat-containing domain
CDDcd002043.78E-14605692No hitNo description
PfamPF127965.4E-8623693IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008810.766633665IPR002110Ankyrin repeat
SMARTSM002480.0021633662IPR002110Ankyrin repeat
SMARTSM002481600672701IPR002110Ankyrin repeat
SMARTSM0001526750772IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525408.76E-8750859IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500968.169751779IPR000048IQ motif, EF-hand binding site
PfamPF006120.19753770IPR000048IQ motif, EF-hand binding site
SMARTSM000150.51807829IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.627808837IPR000048IQ motif, EF-hand binding site
PfamPF006120.0042809828IPR000048IQ motif, EF-hand binding site
SMARTSM000152.3E-4830852IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.938831855IPR000048IQ motif, EF-hand binding site
PfamPF006125.6E-4833852IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 970 aa     Download sequence    Send to blast
MQSEYDISTL YQEAQSRWLK PPEVQFILQN HERLTLTDVA PQRPTSGSLF LFNRRVLKFF  60
RKDGHQWRKK RDGRAIAEAH ERLKVGNAEA LTCYYAHGEH DPTFRRRIYW MLDPEYEHIV  120
LVHYRDVSDR EEGYQTSGQV YQFAPVPATQ NASYNHYIGD STDINQHSST SPGTAEVISD  180
LEGSASSSEL GQALKKLKEQ LSIGDEHVDS VVQPYIQPES LDSLQFLECS NDMDHFAQPT  240
TVYQRPENNR LERCYGGNFG AQYHAKNDSN RLERCYGGYV GAQYHSSNLM LVKNDSGGTG  300
GSGDQGSESW KEVLEACALN SEESTPSSAK GLLAGLQEDS NWSYSNQVDQ STLLFPQDLG  360
SFKVPASYSA LLAPENNGEY CRMMDDGELG LPFEQEMSLT GAYNQKFTIQ DISPEWGFAN  420
ETTKVIIIGS FLCSPEESMW SCMFGSTEVP CKIIKEGVIR CEAPACSPGK VNLCITSGDG  480
LSCSEIKEFE YRGKPDTCCL KCSRPQSSDM STSPDELIIL VRLVQTLLSD RSPEGESNSE  540
LGNDKLLKKL KADDDQWTHV IAEVINGSSS STTTVGWLLQ ELLKDKLDAW LSSRFQMSKK  600
EQGIIHMIAG LGFEWALYPI LDHGVSVDFR DINGWSALHW AARFGSEKMV AALIASGASA  660
GAVTDPTQQD PNGKTAASIA ASYGHKGIAG YLSEVALTNH LSSLTLEETE ISKDSAQVQA  720
EITVNSISET GPSGSEDQLS LEKTLAAVRT AAQAATRIQA AFRAHSFRKR KQREAAMAAC  780
LQEYGIYCED IEGISAMSKR TFGKVKNYHS AALSIQKKYR GYKGRKEFLE LRQKVVKIQA  840
HVRGHQIRKH YRVICWAVGI LDKVVLRWRR KGVGLRGFRP DIETTEDSED EDILKVFRKQ  900
KVDGAVNEAF SRVLSMANSP EARQQYHRVL KRYCQTKAEL GKTETLLGDD DDGLFDIADM  960
EFDSLFTLP*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g032650.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5100260.0AY510026.1 Arabidopsis thaliana ethylene-induced calmodulin-binding protein 4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010415302.10.0PREDICTED: calmodulin-binding transcription activator 4-like isoform X2
SwissprotQ9FYG20.0CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLR0GG070.0R0GG07_9BRAS; Uncharacterized protein
STRINGXP_010415300.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64762642
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.10.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]