PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g032410.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family LBD
Protein Properties Length: 334aa    MW: 36356 Da    PI: 8.4071
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g032410.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26093.22.9e-294106198
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C+++C ++p++     +++q++++ +++k++G++ +++ll++ p++ r+ +++sl+yeA+ r+ +P+yG+vg++++++++l+q+
  Csa07g032410.1   4 SCNGCRVLRKGCSDNCSIRPCLqwiksAESQANATVFLAKFYGRAGLMNLLSTGPDHLRPGIFRSLLYEACGRIVNPIYGSVGLLWSGNWHLCQA 98 
                     6*********************9999777889*************************************************************** PP

          DUF260  91 kaelallk 98 
                     ++e+++++
  Csa07g032410.1  99 AVEAVMRG 106
                     **998766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.6913109IPR004883Lateral organ boundaries, LOB
PfamPF031957.8E-244104IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSDNCS IRPCLQWIKS AESQANATVF LAKFYGRAGL MNLLSTGPDH  60
LRPGIFRSLL YEACGRIVNP IYGSVGLLWS GNWHLCQAAV EAVMRGSPVT PIACDAAVTS  120
QDPPFNNKKL CDIRHVSSKE ENVKRRSRGA CKGERNVRSQ SHESSLSHES PVSSEGTTTX  180
YGSVGLLWSG NWHLCQAAVE AVMRGSPVTP IACDAAVTSQ AHPFNNNKLC DIRHVSSKEE  240
NVKRRSRGAC KGERNVRSQS HESSLSHESP VSSEGTTTEE PKSWIGLELT LGLEPLARGS  300
HVVVPMKKRK LERCGTSEDE DTCKIELGLV CSE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g032410.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2296500.0AK229650.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL19-73-A22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010415261.11e-124PREDICTED: LOB domain-containing protein 40-like isoform X2
SwissprotQ9ZW961e-107LBD40_ARATH; LOB domain-containing protein 40
TrEMBLD7KUZ41e-109D7KUZ4_ARALL; Predicted protein
STRINGXP_010415261.11e-123(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM152481518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67100.11e-107LOB domain-containing protein 40