PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g031960.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 331aa    MW: 37157.6 Da    PI: 8.0085
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g031960.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH48.11.9e-15255279226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ktelC+ +++tG C+yGd+C+FaHg
  Csa07g031960.1 255 KTELCNKWQETGACPYGDNCQFAHG 279
                     9***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.106.3E-19248286IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-11251285IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-9253280IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.539253281IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-12255279IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-8287322IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-12287320IPR000571Zinc finger, CCCH-type
SMARTSM003566.0E-5291318IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.972291319IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MEKLAATTLT DLACVTALNS NSPPPPLSPI SEKSFSNKHQ EEFAASFASL YNSIFSPDSQ  60
FPTSLSLSPS PPSSSSPPAR DDTTTEHRLR QARLILEYDE LNEHYELCIN RLQSLLTELD  120
SLRRENDALR FENSDLLKLT HLSTSSSSSS SSVSSPPPIH NHNRQFRHQI SDFAPIHKHH  180
SRSAKRNSLP KSISVRSPGY LKINQGRSHG FGASDRQTSQ LSNTDSVSLS SQKVCVETKE  240
REALELEVYR QGMTKTELCN KWQETGACPY GDNCQFAHGI DELRPVIRHP RYKTEVCRMI  300
VTGAACPYGH RCHFRHSLTD QERMMMMLTR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A1e-21255317567Butyrate response factor 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g031960.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0132881e-108AC013288.7 Arabidopsis thaliana chromosome 1 BAC F4N21 genomic sequence, complete sequence.
GenBankCP0026841e-108CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010415216.10.0PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ9C9N31e-148C3H14_ARATH; Zinc finger CCCH domain-containing protein 14
TrEMBLR0GI871e-174R0GI87_9BRAS; Uncharacterized protein
STRINGXP_010415216.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM106232533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.11e-144C3H family protein