PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g030410.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GRAS
Protein Properties Length: 509aa    MW: 56261.5 Da    PI: 5.349
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g030410.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS436.81.6e-1331515031374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     lv++Ll+cAeav++++l+la+al++++  la++++ +m+++a+yf+e+La+r++r        + p++++    s++l++   f+e +P+lkf+h
  Csa07g030410.1 151 LVHALLACAEAVQQNNLKLADALVKHVGLLATSQAGAMRKVATYFAEGLARRIYR--------IYPRDDD-VALSDTLQI--HFYESCPYLKFAH 234
                     689****************************************************........4466554.334444444..5************ PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     +taNqaIlea++++++vH+iD+++++GlQWp+L+qaLa Rp+gpp +R+Tg+gs    s +e++e+g++L ++A+++gv+fef+ ++ ++l+dl+
  Csa07g030410.1 235 FTANQAILEAFASADKVHVIDLGLNHGLQWPPLIQALAVRPNGPPDFRLTGIGS----SLTEIQEVGWKLGQLASNIGVNFEFKSIALNNLSDLK 325
                     ******************************************************....9************************************ PP

            GRAS 191 leeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     +e+L+++p  E++aVn+v++lhrll++++s+++    ++++++s++P++++vveqea+hn++ F++rf+e+l+yys+lfdsle       +++++
  Csa07g030410.1 326 PEMLDTRPgLESVAVNSVFELHRLLAQPGSIDK----FISTIRSIRPDIMTVVEQEANHNGTVFVDRFTESLHYYSSLFDSLEGP----PSQDRV 412
                     ********88******************99999....*********************************************999....455566 PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +++ +lgr+i n+vaceg++r+erhe+l++Wr+r+++ GFkpv+++++a+kqa++ll+ ++ +dgy+vee++g+l+lgW++rpL+++SaW+
  Csa07g030410.1 413 MSELFLGRQILNLVACEGEDRVERHESLNQWRNRFGSGGFKPVNIGSNAYKQASMLLALHAgVDGYNVEENEGCLLLGWQTRPLIAASAWQ 503
                     66677*************************************************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011295.9E-3930100No hitNo description
PfamPF120416.4E-323094IPR021914Transcriptional factor DELLA, N-terminal
PROSITE profilePS5098564.822125482IPR005202Transcription factor GRAS
PfamPF035145.6E-131151503IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0042538Biological Processhyperosmotic salinity response
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MKREHNHREL STGEGGSSSM TMKEEAAGVD ELLVVLGYKV RSSDMADVAH KLEQLEMVLG  60
GDGVSNLSDE TVHYNPSDLS GWVESMLSDL DPTRTQGKPD SEYDLRAIPG SAVYPREEHV  120
SRRSKRTRVE SEMSTTRSVV VMDSQETGVR LVHALLACAE AVQQNNLKLA DALVKHVGLL  180
ATSQAGAMRK VATYFAEGLA RRIYRIYPRD DDVALSDTLQ IHFYESCPYL KFAHFTANQA  240
ILEAFASADK VHVIDLGLNH GLQWPPLIQA LAVRPNGPPD FRLTGIGSSL TEIQEVGWKL  300
GQLASNIGVN FEFKSIALNN LSDLKPEMLD TRPGLESVAV NSVFELHRLL AQPGSIDKFI  360
STIRSIRPDI MTVVEQEANH NGTVFVDRFT ESLHYYSSLF DSLEGPPSQD RVMSELFLGR  420
QILNLVACEG EDRVERHESL NQWRNRFGSG GFKPVNIGSN AYKQASMLLA LHAGVDGYNV  480
EENEGCLLLG WQTRPLIAAS AWQINRVE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A9e-6915850226378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. No effect of the BOI proteins on its stability. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Has overlapping but distinct roles in GA signaling compared to RGA and GAI. Regulates the floral development. May also participate in seed germination and in ovule and anther development. Its activity is probably regulated by other phytohormones such as auxin and ethylene. {ECO:0000269|PubMed:11826301, ECO:0000269|PubMed:11877383, ECO:0000269|PubMed:12610625, ECO:0000269|PubMed:14615596, ECO:0000269|PubMed:14973286, ECO:0000269|PubMed:15128937, ECO:0000269|PubMed:16034591}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g030410.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not up-regulated upon GA treatment.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ1777340.0GQ177734.1 Arabidopsis thaliana ecotype Ag-0 RGL1 gene, complete sequence.
GenBankGQ1777530.0GQ177753.1 Arabidopsis thaliana ecotype Nok-3 RGL1 gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010415179.10.0PREDICTED: DELLA protein RGL1-like
SwissprotQ9C8Y30.0RGL1_ARATH; DELLA protein RGL1
TrEMBLR0HYV00.0R0HYV0_9BRAS; Uncharacterized protein
STRINGXP_010415179.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83728121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.10.0RGA-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yan A, et al.
    AtEXP2 is involved in seed germination and abiotic stress response in Arabidopsis.
    PLoS ONE, 2014. 9(1): p. e85208
    [PMID:24404203]
  3. Gallego-Giraldo C, et al.
    Role of the gibberellin receptors GID1 during fruit-set in Arabidopsis.
    Plant J., 2014. 79(6): p. 1020-1032
    [PMID:24961590]
  4. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  5. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  6. Li W,Wang H,Yu D
    Arabidopsis WRKY Transcription Factors WRKY12 and WRKY13 Oppositely Regulate Flowering under Short-Day Conditions.
    Mol Plant, 2016. 9(11): p. 1492-1503
    [PMID:27592586]
  7. Li Y,Wang H,Li X,Liang G,Yu D
    Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(11): p. 2757-2767
    [PMID:28591805]
  8. Chen L,Xiang S,Chen Y,Li D,Yu D
    Arabidopsis WRKY45 Interacts with the DELLA Protein RGL1 to Positively Regulate Age-Triggered Leaf Senescence.
    Mol Plant, 2017. 10(9): p. 1174-1189
    [PMID:28735023]
  9. Zhang L,Chen L,Yu D
    Transcription Factor WRKY75 Interacts with DELLA Proteins to Affect Flowering.
    Plant Physiol., 2018. 176(1): p. 790-803
    [PMID:29133369]