PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa07g019370.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

TCP

Protein Properties

Length: 405aa MW: 42845 Da PI: 6.4621

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa07g019370.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	133.2	2.4e-41	57	226	2	129
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg....... 88 ++ k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai ++tgt++++a+++ ++s +ss+s+ s++ Csa07g019370.1 57 TTTKRSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIVAATGTGTIPANFStLSVSLRSSGSTLSAPpsksvpl 151 789******************************************************************99988888888888666657777778 PP TCP 89 ..................................kaaksaakskksqksaasalnlakesrakarararertrek 129 ++ +++++++++q++ ++ + + sr++ r+ ++ ++ Csa07g019370.1 152 ygalglthhhqhqfdeqggafaaaalatpllgfhHHLQQHHQHHQTQAPVETIPDGENFSRKRYRSVDLSKEDDD 226 888888888888889999999999999998888766666667777777777667777777755555533333222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.2E-41	62	225	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.411	63	117	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 405 aa Download sequence Send to blast
MDLSDIRNNN DTAAVTTGLG GGARQLVDAS LTIVPRSTPL EDSTLSTTTT TSAVAATTTK 60 RSTKDRHTKV DGRGRRIRMP ALCAARVFQL TRELGHKSDG ETIEWLLQQA EPAIVAATGT 120 GTIPANFSTL SVSLRSSGST LSAPPSKSVP LYGALGLTHH HQHQFDEQGG AFAAAALATP 180 LLGFHHHLQQ HHQHHQTQAP VETIPDGENF SRKRYRSVDL SKEDDDDRKQ NESKSLKESE 240 TPDPAAAPMW AVAPTSRSSG GNTFWMLPVP PGNQMESSSN NNNNTAGHRA PMWPFVNSGG 300 AGGGGAGAGA ATHFMAGTGF SFPMDQYRGS PLQLGSFVAQ PQPTQNLGLS MPDSNLGMLA 360 ALNAAYSRGG NGNGNAELAV EHQEKPQQSD HDEESREENS NSSE*

Sequence ? help Back to Top

Protein Sequence Length: 405 aa Download sequence Send to blast

MDLSDIRNNN DTAAVTTGLG GGARQLVDAS LTIVPRSTPL EDSTLSTTTT TSAVAATTTK  60
RSTKDRHTKV DGRGRRIRMP ALCAARVFQL TRELGHKSDG ETIEWLLQQA EPAIVAATGT  120
GTIPANFSTL SVSLRSSGST LSAPPSKSVP LYGALGLTHH HQHQFDEQGG AFAAAALATP  180
LLGFHHHLQQ HHQHHQTQAP VETIPDGENF SRKRYRSVDL SKEDDDDRKQ NESKSLKESE  240
TPDPAAAPMW AVAPTSRSSG GNTFWMLPVP PGNQMESSSN NNNNTAGHRA PMWPFVNSGG  300
AGGGGAGAGA ATHFMAGTGF SFPMDQYRGS PLQLGSFVAQ PQPTQNLGLS MPDSNLGMLA  360
ALNAAYSRGG NGNGNAELAV EHQEKPQQSD HDEESREENS NSSE*

Functional Description ? help Back to Top
Source	Description
UniProt	Can specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269\|PubMed:21297037}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa07g019370.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010414775.1	0.0	PREDICTED: transcription factor TCP8-like
Swissprot	Q9C518	0.0	TCP8_ARATH; Transcription factor TCP8
TrEMBL	A0A178WFL5	0.0	A0A178WFL5_ARATH; TCP8
TrEMBL	R0GHN8	0.0	R0GHN8_9BRAS; Uncharacterized protein
STRING	XP_010414775.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10218	24	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	1e-163	TCP family protein

Publications ? help Back to Top
Mazur MJ, et al. Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092]