PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g019370.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family TCP
Protein Properties Length: 405aa    MW: 42845 Da    PI: 6.4621
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g019370.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP133.22.4e-41572262129
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg....... 88 
                     ++ k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai ++tgt++++a+++  ++s +ss+s+ s++       
  Csa07g019370.1  57 TTTKRSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIVAATGTGTIPANFStLSVSLRSSGSTLSAPpsksvpl 151
                     789******************************************************************99988888888888666657777778 PP

             TCP  89 ..................................kaaksaakskksqksaasalnlakesrakarararertrek 129
                                                       ++ +++++++++q++ ++  +  + sr++ r+    ++ ++
  Csa07g019370.1 152 ygalglthhhqhqfdeqggafaaaalatpllgfhHHLQQHHQHHQTQAPVETIPDGENFSRKRYRSVDLSKEDDD 226
                     888888888888889999999999999998888766666667777777777667777777755555533333222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.2E-4162225IPR005333Transcription factor, TCP
PROSITE profilePS5136928.41163117IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MDLSDIRNNN DTAAVTTGLG GGARQLVDAS LTIVPRSTPL EDSTLSTTTT TSAVAATTTK  60
RSTKDRHTKV DGRGRRIRMP ALCAARVFQL TRELGHKSDG ETIEWLLQQA EPAIVAATGT  120
GTIPANFSTL SVSLRSSGST LSAPPSKSVP LYGALGLTHH HQHQFDEQGG AFAAAALATP  180
LLGFHHHLQQ HHQHHQTQAP VETIPDGENF SRKRYRSVDL SKEDDDDRKQ NESKSLKESE  240
TPDPAAAPMW AVAPTSRSSG GNTFWMLPVP PGNQMESSSN NNNNTAGHRA PMWPFVNSGG  300
AGGGGAGAGA ATHFMAGTGF SFPMDQYRGS PLQLGSFVAQ PQPTQNLGLS MPDSNLGMLA  360
ALNAAYSRGG NGNGNAELAV EHQEKPQQSD HDEESREENS NSSE*
Functional Description ? help Back to Top
Source Description
UniProtCan specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269|PubMed:21297037}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g019370.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010414775.10.0PREDICTED: transcription factor TCP8-like
SwissprotQ9C5180.0TCP8_ARATH; Transcription factor TCP8
TrEMBLA0A178WFL50.0A0A178WFL5_ARATH; TCP8
TrEMBLR0GHN80.0R0GHN8_9BRAS; Uncharacterized protein
STRINGXP_010414775.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102182433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.11e-163TCP family protein
Publications ? help Back to Top
  1. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]