PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g015320.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GRAS
Protein Properties Length: 1421aa    MW: 159023 Da    PI: 5.242
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g015320.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS349.26.5e-1072336112373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetsekn..sseelaalklfsevsPilkf 93 
                     ++lL+ cA+a+s+gd++ a  lL ++++++sp gd+ qRla++f++AL+arl++s+ ++ +   ++ +ts+ +   +++l+a++++   sP++++
  Csa07g015320.1 233 RTLLTLCAQAISTGDKTTALDLLMQIRQQSSPIGDAGQRLAHCFANALEARLQGSTGSMIQNYyNAITTSSLKetATDTLKAYRVYLSSSPFVTL 327
                     6799*************************************************966555444323333333223499****************** PP

            GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186
                      ++   ++Il+a   ++ +Hi+Df+i +G+QWp ++q ++sR++ p +lRiTg++ p+ g   +e++eetg+rLa+++++++vpfe+++++++++
  Csa07g015320.1 328 MYFFSFRMILDASIDASVLHIVDFGILYGFQWPMFIQYISSRKDAPRKLRITGIELPQRGfrPAERIEETGRRLAEYCKRFNVPFEYKAIASQHW 422
                     **********************************************************99*****************************9999** PP

            GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                     e++++++L+++p+E+laV   l+l++l de++s e+ +rd+vLkl+++++P+v++++  + + n++ F  rf ea+++ysalfd+++++lpr++e
  Csa07g015320.1 423 EKIRIQDLDIRPNEVLAVTAGLRLKNLQDETGSEENcPRDAVLKLIRNMNPNVFIHSIVNGSFNAPFFISRFKEAVYHYSALFDMFDSTLPRDNE 517
                     ************************************99********************************************************* PP

            GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                     eri  Ere+ gre++nv+ace+a+r+er et+++W+ r+ +aGF++ +++ + +++ +  l+k +  + + v+e+s++l++gWk+r+L++ S+W
  Csa07g015320.1 518 ERIRFEREFYGREAMNVIACEEADRVERPETYRQWQVRMVRAGFRQKQVKPELVEKFREKLKKWGyHKDFVVDENSKWLLQGWKGRTLYASSCW 611
                     ****************************************************************99999************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.885206591IPR005202Transcription factor GRAS
PfamPF035142.3E-104233611IPR005202Transcription factor GRAS
PfamPF057011.5E-2437711330IPR008545WEB family
Sequence ? help Back to Top
Protein Sequence    Length: 1421 aa     Download sequence    Send to blast
MMDPNLDANP SFLADPVEED QYTLLKYVSE ILMEESNGDY KQSMFYDSLA LQKTEEMLQQ  60
VITDSQNQSF SSDSIITTSS SSFAGRDASG SIVESADLRI SPAVVKSIFS DADSALQFKK  120
GVEEASKFLP NSDQWLIKPE WCDLGLDQLR VKRSHEREVI DFEEVRNSKQ FATNVEDGKI  180
TELFDKVLLL DSECDPPTLL DSKIQEIRSS NKQGVKGKKE KKKKKKSQVV DFRTLLTLCA  240
QAISTGDKTT ALDLLMQIRQ QSSPIGDAGQ RLAHCFANAL EARLQGSTGS MIQNYYNAIT  300
TSSLKETATD TLKAYRVYLS SSPFVTLMYF FSFRMILDAS IDASVLHIVD FGILYGFQWP  360
MFIQYISSRK DAPRKLRITG IELPQRGFRP AERIEETGRR LAEYCKRFNV PFEYKAIASQ  420
HWEKIRIQDL DIRPNEVLAV TAGLRLKNLQ DETGSEENCP RDAVLKLIRN MNPNVFIHSI  480
VNGSFNAPFF ISRFKEAVYH YSALFDMFDS TLPRDNEERI RFEREFYGRE AMNVIACEEA  540
DRVERPETYR QWQVRMVRAG FRQKQVKPEL VEKFREKLKK WGYHKDFVVD ENSKWLLQGW  600
KGRTLYASSC WVPLTFLLAP RSSSSIHPPS SCYRGGMEDL KNPTESGDIV SDNNAATLNP  660
ELVESASTRE SNLQQSVSKV DDNIPQSQTH NEESLSASDA ATEKEISSTT TIVEEQVSEL  720
NEIGLPSVKT VVVGTATNDG SATTVSSPRP HLSPRFSGSA GTPKNVDSPH RGIIDNAAPF  780
ESVKEAVSKF GGITDWKSHR MQAVGRRKLI EEELKKIHDE IPEYKTHSET AEAAKLKVLK  840
ELESTKRLIE QLKLNLEKAQ TEEQQAKQDS ELAKLRVEEM EQGIAEDVSV AAKAQLEVAK  900
ARHNGAVTEL CSVKDELETL HKEYDALVQD KDVAVKKVEE ATLASKEVEK TVEELTIELI  960
ATKESLESAH ASHLEAEEQR IGAAMARDQD THRWEKELKQ AEDELQKLNQ QIHSSKDLKA  1020
KLDTASALLL DLKAELVAYM ESKLKQEACD SSTTNSDPST DLHGAVASAK KELEEVNANI  1080
EKAAAEVNCL KLASASLQME LEKEKSALAS IKQREGMASI AVASLESEIE RTRSEIASVQ  1140
SKEKEGRDKM VELPKQLQQA AEEADEAKSL AELAREELRK AKEDSDQAKA GASTMESRLF  1200
AAQKEIEAAK ASERLALAAI KALEESESTT LKENAPQSVT LSLEEYYELS KRAHEAEELA  1260
NARVAAAVSR IEEAKETEMR SLEKLEEVNR DMDARKKALK EATEKAEKAK EGKLGVEQEL  1320
RKWRAEHEQK RKAGGDGVNN TEKSHQRGSS FEGGGNELSK LEKSSPEEAA VYASSPSDSY  1380
GTEDNVSETN QSPQTKSGKK KKKLSFPRFF MFLSKKKSHN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-3923961111374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1217225KKEKKKKKK
214141418KKKSH
Functional Description ? help Back to Top
Source Description
UniProtRequired for the chloroplast avoidance response under high intensity blue light. This avoidance response consists in the relocation of chloroplasts on the anticlinal side of exposed cells. Acts in association with PMI2 to maintain the velocity of chloroplast photorelocation movement via cp-actin filaments regulation. {ECO:0000269|PubMed:20974974}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g015320.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010414445.10.0PREDICTED: protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1
SwissprotO487240.0WEB1_ARATH; Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1
TrEMBLR0FVJ70.0R0FVJ7_9BRAS; Uncharacterized protein
STRINGXP_010414445.10.0(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29065.10.0GRAS family protein
Publications ? help Back to Top
  1. Kodama Y,Suetsugu N,Kong SG,Wada M
    Two interacting coiled-coil proteins, WEB1 and PMI2, maintain the chloroplast photorelocation movement velocity in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2010. 107(45): p. 19591-6
    [PMID:20974974]
  2. Gardiner J,Overall R,Marc J
    Putative Arabidopsis homologues of metazoan coiled-coil cytoskeletal proteins.
    Cell Biol. Int., 2011. 35(8): p. 767-74
    [PMID:21284606]
  3. Deng Z, et al.
    Blue light-induced proteomic changes in etiolated Arabidopsis seedlings.
    J. Proteome Res., 2014. 13(5): p. 2524-33
    [PMID:24712693]
  4. Suetsugu N,Higa T,Kong SG,Wada M
    PLASTID MOVEMENT IMPAIRED1 and PLASTID MOVEMENT IMPAIRED1-RELATED1 Mediate Photorelocation Movements of Both Chloroplasts and Nuclei.
    Plant Physiol., 2015. 169(2): p. 1155-67
    [PMID:26324877]
  5. Suetsugu N,Wada M
    Two Coiled-Coil Proteins, WEB1 and PMI2, Suppress the Signaling Pathway of Chloroplast Accumulation Response that Is Mediated by Two Phototropin-Interacting Proteins, RPT2 and NCH1, in Seed Plants.
    Int J Mol Sci, 2018.
    [PMID:28698471]