PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g014720.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 383aa    MW: 42316.4 Da    PI: 8.2033
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g014720.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.17.1e-06141164123
                     EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                     ++C+ Cg+ F r  +L++Hi   H
  Csa07g014720.1 141 FPCNSCGEIFARTNLLESHIAIkH 164
                     89******************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512576124No hitNo description
PROSITE profilePS501579.764141169IPR007087Zinc finger, C2H2
PROSITE patternPS000280143164IPR007087Zinc finger, C2H2
SuperFamilySSF563992.88E-11166381No hitNo description
Gene3DG3DSA:3.90.228.104.2E-5309381IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MAARKLGSLL RQYFFSLCFL FLGCFFFPKG ADCKQKRRKK KLRTVSLSSS GSALSSSWTY  60
LKRVFLSTTR ISKSRNQTHP NGTLTSARSS QNSLVTLVQP ETTTTDQPDP ATRTQQQPEF  120
EISYSDHNDP LFLLPLRNEI FPCNSCGEIF ARTNLLESHI AIKHAVSELI AGESSTNIVE  180
IIFKSGWPIG KSPEINRILK IHNSQKILTR FEEYREFVKA KAARSRWEDE RCVADGNELL  240
QFYCSTFMCD LGQNGKSNLC GHQYCSVCGI IGSGFSPKLD GIATLATGWR GHVAVPEEVE  300
EEFGFMNVKR AMLVCRVVAG RVGCDLMIDD VDKSEGGGGG GYDSVVGQSG SKSGALLRID  360
DDELLVFNPR AVLPCFVIVY TV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13641RRKKKL
23642RRKKKLR
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g014720.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0054960.0AC005496.3 Arabidopsis thaliana chromosome 2 clone T27A16 map mi54, complete sequence.
GenBankAY0843790.0AY084379.1 Arabidopsis thaliana clone 106148 mRNA, complete sequence.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010414362.10.0PREDICTED: uncharacterized protein LOC104700533
TrEMBLR0HTA30.0R0HTA3_9BRAS; Uncharacterized protein
STRINGXP_010414362.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79192640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.11e-167C2H2 family protein