PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa07g007480.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

C3H

Protein Properties

Length: 1033aa MW: 112845 Da PI: 7.2864

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa07g007480.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.6	3.4e-06	101	121	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 lC+ffa+ G+C G +CkF H+ Csa07g007480.1 101 LCKFFAK-GWCFNGVSCKFLHV 121 8****.***********7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	5.23E-6	96	120	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0081	96	122	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.004	101	123	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010220	Biological Process	positive regulation of vernalization response
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1033 aa Download sequence Send to blast
MSDSDMDIDD DEVEQKVQVH TIGGESQLLH KPIQAPNPQN DVKRHSVTTP SNEQANIIKE 60 QAFAQDNGTL SRFPAPGITP NSFFPAAGEG NEPEQKRAAH LCKFFAKGWC FNGVSCKFLH 120 VKENSNCTSQ QQPENNMAGS SYIQSDVERR ISNSIRVSHL MENGVTPSHT REDLSFVNPP 180 GSQRVFSSMS FVNPPGSQRV FPFNNEMRFL PSSENIGRES LQQTCGAAFT DNRSLVINNS 240 NSFTLRSSFV HHEHRSPISS YLKPDIGSSG PAWTGSLSSS VASVPMNEGA STVANFKKED 300 NIYGSRSLPT LQESQAAVSS EKGAAGNTTS SRKKVSSDDW EPSEPFKASF TIPPYILPSS 360 DALYDPFTDI ENLGDRSRNA SLSSKGEQAR KNSRQQKDGD SGSGTQAREC KNDDKSSSCS 420 QNQHQESVAR RSLEPHGVVE GVATSVVDQN DTATPSKEIS SAAAAENRVV LKRSKPAGHD 480 AWHRSDGSSY KKTLKSDEID GEVRSDAEIK VMRQFRTAVV ETVKEMLKPL WREGRLTKDV 540 HNMIVKKAAE KVVSAAVQFH QVPTDTGSVD QYLGLSATKI VKLVEGNNIC GSRSLPTLQE 600 SQAAVSSEKG AACNTTSSKK KVSSDDWEPS EPFKASFTIP PYILPSSDAL YDPFTDIENL 660 GDRSLNASLS SKGEQARKNS RQQKDGDSGS GTQARECKND DKSSSCSQNQ HQESVARRSL 720 EAHGVVEGVA TSVVDQNDTT TPSKEISSVA AAENRVVLKR SKPAGHDAWH RSDGSSYKKT 780 LKSDEIDGEV RSDAEIKVMR QFRTAVVETV KEMLKPLWRE GRLTKDVHNM IVKKAAEKVV 840 SAAVQFHQVP TDTGSVDQYL GLSATKIVKL VEGYVEKYVE GVATSVVDQN DTATPSKEIS 900 SAAAAENRVV LKRSKPAGHD AWHRSDGSSY KKTLKSDEID GEVRSDAEIK VMRQFRTAVV 960 ETVKEMLKPL WREGRLTKDV HNMIVKKAAE KVVSAAVQFH QVPTDTGSVD QYLGLSATKI 1020 VKLVEVSFLD RN*

Sequence ? help Back to Top

Protein Sequence Length: 1033 aa Download sequence Send to blast

MSDSDMDIDD DEVEQKVQVH TIGGESQLLH KPIQAPNPQN DVKRHSVTTP SNEQANIIKE  60
QAFAQDNGTL SRFPAPGITP NSFFPAAGEG NEPEQKRAAH LCKFFAKGWC FNGVSCKFLH  120
VKENSNCTSQ QQPENNMAGS SYIQSDVERR ISNSIRVSHL MENGVTPSHT REDLSFVNPP  180
GSQRVFSSMS FVNPPGSQRV FPFNNEMRFL PSSENIGRES LQQTCGAAFT DNRSLVINNS  240
NSFTLRSSFV HHEHRSPISS YLKPDIGSSG PAWTGSLSSS VASVPMNEGA STVANFKKED  300
NIYGSRSLPT LQESQAAVSS EKGAAGNTTS SRKKVSSDDW EPSEPFKASF TIPPYILPSS  360
DALYDPFTDI ENLGDRSRNA SLSSKGEQAR KNSRQQKDGD SGSGTQAREC KNDDKSSSCS  420
QNQHQESVAR RSLEPHGVVE GVATSVVDQN DTATPSKEIS SAAAAENRVV LKRSKPAGHD  480
AWHRSDGSSY KKTLKSDEID GEVRSDAEIK VMRQFRTAVV ETVKEMLKPL WREGRLTKDV  540
HNMIVKKAAE KVVSAAVQFH QVPTDTGSVD QYLGLSATKI VKLVEGNNIC GSRSLPTLQE  600
SQAAVSSEKG AACNTTSSKK KVSSDDWEPS EPFKASFTIP PYILPSSDAL YDPFTDIENL  660
GDRSLNASLS SKGEQARKNS RQQKDGDSGS GTQARECKND DKSSSCSQNQ HQESVARRSL  720
EAHGVVEGVA TSVVDQNDTT TPSKEISSVA AAENRVVLKR SKPAGHDAWH RSDGSSYKKT  780
LKSDEIDGEV RSDAEIKVMR QFRTAVVETV KEMLKPLWRE GRLTKDVHNM IVKKAAEKVV  840
SAAVQFHQVP TDTGSVDQYL GLSATKIVKL VEGYVEKYVE GVATSVVDQN DTATPSKEIS  900
SAAAAENRVV LKRSKPAGHD AWHRSDGSSY KKTLKSDEID GEVRSDAEIK VMRQFRTAVV  960
ETVKEMLKPL WREGRLTKDV HNMIVKKAAE KVVSAAVQFH QVPTDTGSVD QYLGLSATKI  1020
VKLVEVSFLD RN*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in the FRIGIDA-mediated vernalization pathway, but not in the autonomous flowering pathway. Acts cooperatively with FRI (FRIGIDA) or FRL1 (FRIGIDA-LIKE 1) to promote FLC (FLOWERING LOCUS C) expression. Required for the stabilization of the FRI-C complex. {ECO:0000269\|PubMed:16291783, ECO:0000269\|PubMed:21282526}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa07g007480.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK228866	0.0	AK228866.1 Arabidopsis thaliana mRNA for zinc finger (CCCH type) protein - like, clone: RAFL16-19-E15.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019082932.1	0.0	PREDICTED: protein FRIGIDA-ESSENTIAL 1-like isoform X1
Swissprot	Q84VG7	0.0	FES1_ARATH; Protein FRIGIDA-ESSENTIAL 1
TrEMBL	D7LGF2	0.0	D7LGF2_ARALL; Frigida-essential 1
STRING	XP_010413800.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13468	15	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	0.0	C3H family protein

Publications ? help Back to Top
Ding L,Kim SY,Michaels SD FLOWERING LOCUS C EXPRESSOR family proteins regulate FLOWERING LOCUS C expression in both winter-annual and rapid-cycling Arabidopsis. Plant Physiol., 2013. 163(1): p. 243-52 [PMID:23899645]