PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa07g007390.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | WOX | ||||||||
Protein Properties | Length: 306aa MW: 33581.8 Da PI: 8.4676 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 22.2 | 2.4e-07 | 4 | 32 | 33 | 57 |
HHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 33 LAkkl....gLterqVkvWFqNrRakekk 57 + ++l ++ +++V++WFqNr+ + k+ Csa07g007390.1 4 IRAQLqeygQVGDANVFYWFQNRKSRSKH 32 445555555999**************995 PP | |||||||
2 | Wus_type_Homeobox | 55.3 | 1.6e-18 | 1 | 33 | 32 | 64 |
Wus_type_Homeobox 32 iqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 i+ri+a+L+eyG+++d+NVfyWFQNrk+R+++k Csa07g007390.1 1 IRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHK 33 89*****************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00046 | 6.5E-5 | 4 | 32 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
IRRIRAQLQE YGQVGDANVF YWFQNRKSRS KHKLRLLHNH SKHFLPQSQP QPQPQQQPLS 60 SANSASSSSS SSSSSSKSTK PRKNKNKNNT NLSLGSSQMM GTMLPPEAAF LFPVSTVGGF 120 EGITVSSQLG FLSGDMIEQQ KPAPTMGPCT GLLLSEIMNG SVSYGTHHQQ HLSEKEDEEM 180 RMKMLQQPQP QICYATTSQQ ITCYNNNNNI MLHVPPTTST TTTITTSHSL ATVPSTSDQL 240 QVQAGARIRV FINEMELEVT PGPFNVRDAF GEEVVLINSA GQPIVTDEYG VALQPLQHGA 300 SYYLI* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Homeodomain transcription factor required for meristem growth and early development (PubMed:15753038). Promotes cell proliferation and prevents premature differentiation in meristematic tissues during postembryonic development (PubMed:15753038). Essential for maintaining tissue growth during embryogenesis (PubMed:17706632). May act by repressing TSS to promote meristematic proliferation (PubMed:21185286). Involved in the transcriptional activation of a subset of cytokinin response factors (PubMed:20110319). May act as a negative regulator of cytokinin signaling in the dark (PubMed:21057190). {ECO:0000269|PubMed:15753038, ECO:0000269|PubMed:17706632, ECO:0000269|PubMed:20110319, ECO:0000269|PubMed:21057190, ECO:0000303|PubMed:21185286}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa07g007390.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in the zygote after fertilization by the transcription factor WRKY2. {ECO:0000269|PubMed:21316593}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK118501 | 0.0 | AK118501.1 Arabidopsis thaliana At2g33880 mRNA for putative homeodomain transcription factor, complete cds, clone: RAFL19-73-K21. | |||
GenBank | AY251401 | 0.0 | AY251401.1 Arabidopsis thaliana WOX9 protein mRNA, complete cds. | |||
GenBank | BT005296 | 0.0 | BT005296.1 Arabidopsis thaliana At2g33880 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010473852.1 | 0.0 | PREDICTED: WUSCHEL-related homeobox 9 | ||||
Swissprot | Q6X7J4 | 1e-153 | WOX9_ARATH; WUSCHEL-related homeobox 9 | ||||
TrEMBL | V4M6W2 | 1e-162 | V4M6W2_EUTSA; Uncharacterized protein | ||||
STRING | XP_010418645.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7206 | 26 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33880.1 | 1e-113 | homeobox-3 |
Publications ? help Back to Top | |||
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