PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa07g007390.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

WOX

Protein Properties

Length: 306aa MW: 33581.8 Da PI: 8.4676

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa07g007390.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	22.2	2.4e-07	4	32	33	57
HHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 33 LAkkl....gLterqVkvWFqNrRakekk 57 + ++l ++ +++V++WFqNr+ + k+ Csa07g007390.1 4 IRAQLqeygQVGDANVFYWFQNRKSRSKH 32 445555555999**************995 PP
2	Wus_type_Homeobox	55.3	1.6e-18	1	33	32	64
Wus_type_Homeobox 32 iqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 i+ri+a+L+eyG+++d+NVfyWFQNrk+R+++k Csa07g007390.1 1 IRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHK 33 89*****************************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00046	6.5E-5	4	32	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
IRRIRAQLQE YGQVGDANVF YWFQNRKSRS KHKLRLLHNH SKHFLPQSQP QPQPQQQPLS 60 SANSASSSSS SSSSSSKSTK PRKNKNKNNT NLSLGSSQMM GTMLPPEAAF LFPVSTVGGF 120 EGITVSSQLG FLSGDMIEQQ KPAPTMGPCT GLLLSEIMNG SVSYGTHHQQ HLSEKEDEEM 180 RMKMLQQPQP QICYATTSQQ ITCYNNNNNI MLHVPPTTST TTTITTSHSL ATVPSTSDQL 240 QVQAGARIRV FINEMELEVT PGPFNVRDAF GEEVVLINSA GQPIVTDEYG VALQPLQHGA 300 SYYLI*

Functional Description ? help Back to Top
Source	Description
UniProt	Homeodomain transcription factor required for meristem growth and early development (PubMed:15753038). Promotes cell proliferation and prevents premature differentiation in meristematic tissues during postembryonic development (PubMed:15753038). Essential for maintaining tissue growth during embryogenesis (PubMed:17706632). May act by repressing TSS to promote meristematic proliferation (PubMed:21185286). Involved in the transcriptional activation of a subset of cytokinin response factors (PubMed:20110319). May act as a negative regulator of cytokinin signaling in the dark (PubMed:21057190). {ECO:0000269\|PubMed:15753038, ECO:0000269\|PubMed:17706632, ECO:0000269\|PubMed:20110319, ECO:0000269\|PubMed:21057190, ECO:0000303\|PubMed:21185286}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa07g007390.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in the zygote after fertilization by the transcription factor WRKY2. {ECO:0000269\|PubMed:21316593}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK118501	0.0	AK118501.1 Arabidopsis thaliana At2g33880 mRNA for putative homeodomain transcription factor, complete cds, clone: RAFL19-73-K21.
GenBank	AY251401	0.0	AY251401.1 Arabidopsis thaliana WOX9 protein mRNA, complete cds.
GenBank	BT005296	0.0	BT005296.1 Arabidopsis thaliana At2g33880 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010473852.1	0.0	PREDICTED: WUSCHEL-related homeobox 9
Swissprot	Q6X7J4	1e-153	WOX9_ARATH; WUSCHEL-related homeobox 9
TrEMBL	V4M6W2	1e-162	V4M6W2_EUTSA; Uncharacterized protein
STRING	XP_010418645.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7206	26	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33880.1	1e-113	homeobox-3

Publications ? help Back to Top
Wang W, et al. Dwarf Tiller1, a Wuschel-related homeobox transcription factor, is required for tiller growth in rice. PLoS Genet., 2014. 10(3): p. e1004154 [PMID:24625559] Zhu T,Moschou PN,Alvarez JM,Sohlberg JJ,von Arnold S Wuschel-related homeobox 8/9 is important for proper embryo patterning in the gymnosperm Norway spruce. J. Exp. Bot., 2014. 65(22): p. 6543-52 [PMID:25205582] Raines T, et al. The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis. Plant J., 2016. 85(1): p. 134-47 [PMID:26662515] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605] Blein T,Pautot V,Laufs P Combinations of Mutations Sufficient to Alter Arabidopsis Leaf Dissection. Plants (Basel), 2013. 2(2): p. 230-47 [PMID:27137374]