PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g002010.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ARR-B
Protein Properties Length: 572aa    MW: 64615.2 Da    PI: 4.8755
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g002010.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like73.82.4e-23234292155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelm....kvkgLtlehvkSHLQkYRl 55 
                     kpr++W+ eLH++F  ave++G  ekA Pk+il++m    +v+gLt+++v+SHLQkYR 
  Csa07g002010.1 234 KPRMKWSAELHQKFEAAVEKIGSVEKAYPKQILKCMqedmNVQGLTRNNVASHLQKYRQ 292
                     79*******************************985333389****************6 PP
2Response_reg42.92.6e-15441671105
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHH.HHHT.......TT..........SEEE CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkei.reee.......pk..........lpii 75 
                     vl+vd + + + l+++++ +  y +v+  d+geea++ l +++  +Dl+l D  mp+++Gl++l +i +e +       ++            + 
  Csa07g002010.1  44 VLLVDADSNSLLLMTNLMAQYSY-QVTKYDNGEEAMAFLMKSKheIDLVLWDFHMPDINGLDALNTIgKEMDlpvvtrvYNkeisnlpyvnHSCP 137
                     89*********************.***************666667**********************8888885554441144555444444555 PP

                     EEESTTTHHHHHHHHHTTESEEEESS--HH CS
    Response_reg  76 vvtahgeeedalealkaGakdflsKpfdpe 105
                     v++   ++e++ +  k Ga dfl+Kp+++e
  Csa07g002010.1 138 VMSHDHKKETVMASTKNGACDFLVKPVSKE 167
                     778777788888888999999999998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23007.5E-2741184No hitNo description
SuperFamilySSF521722.42E-2141184IPR011006CheY-like superfamily
SMARTSM004482.0E-1142172IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011030.2243177IPR001789Signal transduction response regulator, receiver domain
PfamPF000727.8E-1244167IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.75E-1445172No hitNo description
PROSITE profilePS512949.523231295IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.7E-23232294IPR009057Homeodomain-like
SuperFamilySSF466896.09E-14232295IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-19234292IPR006447Myb domain, plants
PfamPF002493.0E-7236291IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MSVSANILDE NSRNLRKEVL SCDDEIESPI NDDDEEFPTT SIRVLLVDAD SNSLLLMTNL  60
MAQYSYQVTK YDNGEEAMAF LMKSKHEIDL VLWDFHMPDI NGLDALNTIG KEMDLPVVTR  120
VYNKEISNLP YVNHSCPVMS HDHKKETVMA STKNGACDFL VKPVSKEVVA VVWQHVYRKR  180
MSKSGLVKPG ESYTVESDSD EYEGLLREDN LYQSNGEGSK NTCDQREDTS SAKKPRMKWS  240
AELHQKFEAA VEKIGSVEKA YPKQILKCMQ EDMNVQGLTR NNVASHLQKY RQSSNKKTST  300
PQETQEDFDW CNTGLDPPDL AASNPPLSST RAPYFMNNFQ AAAVPKTSYF TTDQTAPPIP  360
YLSNGYNLPM NNKNNYFMAS QFQQPLQQQQ YQYPCLNLPS ILTKQESGHV SSAMETSDTL  420
IYNNSSFPNF DHDEYFLPAE FTNNNNHDQF PPAGLNNNRD HQFPPAGMNH NHDQFSPAGM  480
NNNNNNNNNN NRDQFPPAGL NNNNRDQFPP SGLNNTRDQF PPSGLNNTRD QFPPSGLNNT  540
RDQFPPSGLN NTRDQFPPAG FNNNFDQTCR N*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g002010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1626512e-58AL162651.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F26K9.
GenBankCP0026862e-58CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010418562.20.0PREDICTED: putative two-component response regulator ARR20
SwissprotQ9LZJ81e-170ARR20_ARATH; Putative two-component response regulator ARR20
TrEMBLR0HLD90.0R0HLD9_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010418562.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137711825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G62670.11e-124response regulator 20