PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g001280.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HSF
Protein Properties Length: 295aa    MW: 33925.3 Da    PI: 5.8502
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g001280.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind107.41.1e-33261342103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT.......XTTSEEEEESXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks.......kekiweFkhksFkkg 89 
                     F++k+ye+++d+++++++sws+ g sfvv+d+++f+ ++Lp yFkh+nf+SFvRQLn+Y ++ +  +++++         +++ weF ++ F  g
  Csa07g001280.1  26 FITKTYEMVNDPNINHIVSWSRGGISFVVWDPHSFSATILPLYFKHNNFSSFVRQLNTYFWRTSMMRSASNYCrmgfrkiETERWEFMNEGFLMG 120
                     9**********************************************************99998888877555677765559************* PP

                     XXXXXXXXXXXXXX CS
    HSF_DNA-bind  90 kkellekikrkkse 103
                     +++ll++ikr++s+
  Csa07g001280.1 121 QRDLLKSIKRRASS 134
                     ***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.5E-3422131IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.92E-3122131IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004159.3E-4522131IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.0E-2926131IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.0E-152649IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.0E-156476IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.0E-157789IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MDPPSSSRPR SMPPVPMQEP PGPSPFITKT YEMVNDPNIN HIVSWSRGGI SFVVWDPHSF  60
SATILPLYFK HNNFSSFVRQ LNTYFWRTSM MRSASNYCRM GFRKIETERW EFMNEGFLMG  120
QRDLLKSIKR RASSSAPPSL HHSQSEGHDP SSVEAPQLRE ESHVLMMEIS RLRQEEQRAR  180
GYIQAMEQRI NGAEKKQRHM MSFLRRAVQN PSLLQQILEQ MTGIEEAAMI DQDSLVKTEA  240
VEHVSELEAL ALEMQGYGRQ RIDGVERELD DGFWEELLMS NDNSGEEEAN VKQS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A5e-211713411123Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124130LKSIKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g001280.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1386481e-179AL138648.2 Arabidopsis thaliana DNA chromosome 3, BAC clone F16M2.
GenBankAL1638181e-179AL163818.1 Arabidopsis thaliana DNA chromosome 3, P1 clone MAA21 (ESSA project).
GenBankCP0026861e-179CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
GenBankJX1120281e-179JX112028.1 Arabidopsis thaliana truncated heat shock factor A7b mRNA, complete cds, alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010413157.10.0PREDICTED: heat stress transcription factor A-7b-like
SwissprotQ9M1V51e-160HFA7B_ARATH; Heat stress transcription factor A-7b
TrEMBLD7LTQ21e-172D7LTQ2_ARALL; Uncharacterized protein
STRINGXP_010413157.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM148361619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G63350.11e-141HSF family protein