PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa07g001030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | C3H | ||||||||
Protein Properties | Length: 393aa MW: 44062.9 Da PI: 6.7248 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 17.6 | 6.8e-06 | 3 | 26 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k+ lC+ffa G C Gd C F+H+ Csa07g001030.1 3 KRILCKFFAH-GACLKGDHCEFSHD 26 889***6666.*************5 PP | |||||||
2 | zf-CCCH | 20.1 | 1.1e-06 | 34 | 50 | 5 | 22 |
--SGGGGTS--TTTTT-S CS zf-CCCH 5 lCrffartGtCkyGdrCk 22 +C f++r G+C+yG+rC+ Csa07g001030.1 34 ICTFYQR-GICSYGSRCR 50 7**9999.*********7 PP | |||||||
3 | zf-CCCH | 19.6 | 1.6e-06 | 130 | 152 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C+ +a+ G C++Gd C+ +Hg Csa07g001030.1 130 QPICS-YAAAGDCPRGDECPHIHG 152 68999.*************99997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 4.2E-5 | 1 | 27 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.784 | 1 | 28 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.9E-4 | 3 | 28 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.4E-7 | 3 | 26 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.037 | 29 | 56 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.065 | 31 | 53 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.549 | 127 | 154 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.019 | 128 | 153 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF57850 | 1.29E-8 | 186 | 260 | No hit | No description |
Gene3D | G3DSA:3.30.40.10 | 1.4E-9 | 191 | 256 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
CDD | cd00162 | 7.34E-4 | 195 | 255 | No hit | No description |
Pfam | PF00097 | 4.5E-7 | 196 | 253 | IPR018957 | Zinc finger, C3HC4 RING-type |
PROSITE profile | PS50089 | 12.342 | 196 | 254 | IPR001841 | Zinc finger, RING-type |
SMART | SM00184 | 5.5E-7 | 196 | 253 | IPR001841 | Zinc finger, RING-type |
PROSITE pattern | PS00518 | 0 | 220 | 229 | IPR017907 | Zinc finger, RING-type, conserved site |
SMART | SM00356 | 0.16 | 283 | 311 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.197 | 283 | 312 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 393 aa Download sequence Send to blast |
MSKRILCKFF AHGACLKGDH CEFSHDWKDP TNNICTFYQR GICSYGSRCR HGHVKASRPH 60 PSASSSSRSS PASASNPLTC AFLPGVSDRD LIPVPSSSLK PTWNLDSLHQ DPLDEVNNTF 120 NPGTAKPEEQ PICSYAAAGD CPRGDECPHI HGNICLTCGK CCLHPFRLDE REEHKKVCEK 180 KHKQLEALKL SQEIECCVCL ERVLSKPTPA ERKFGLLTEC DHAFCIACIR NWRSSSPSTG 240 MDVNSTLRAC PICRKLSYFV VPSVIWFSAP EEKKEIMDNY REKLRSIDCK HFNFGDGNCP 300 FGTSCFYKHT VKPGSYAWKY HRPPPRRPRP SGSNFSDVDT LVNMIGNIIS EGEYGPIGFE 360 DTDDDELTTT DMMMLLMHMD IESEDSSNED IY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa07g001030.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ903576 | 0.0 | GQ903576.1 Arabidopsis thaliana ecotype Wassilewskija chloroplast luminal 19 kDa protein (At3g63540) gene, complete cds; and CCCH-type zinc finger protein C3H69 (At3g63550) gene, complete cds, alternatively spliced; nuclear genes for chloroplast products. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010413123.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X1 | ||||
Swissprot | E0X9N4 | 0.0 | C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69 | ||||
TrEMBL | A0A1J3FGX6 | 0.0 | A0A1J3FGX6_NOCCA; Zinc finger CCCH domain-containing protein 69 | ||||
TrEMBL | A0A1J3J5L1 | 0.0 | A0A1J3J5L1_NOCCA; Zinc finger CCCH domain-containing protein 69 | ||||
TrEMBL | E0X9N6 | 0.0 | E0X9N6_ARATH; CCCH-type zinc finger protein C3H69 | ||||
STRING | XP_010413123.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2944 | 27 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08505.2 | 1e-127 | C3H family protein |
Publications ? help Back to Top | |||
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