PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa07154s010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | C3H | ||||||||
Protein Properties | Length: 84aa MW: 9758 Da PI: 5.197 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.3 | 2.2e-07 | 17 | 40 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k lC ff + G+C+ G +CkF+H+ Csa07154s010.1 17 KSILCEFFKA-GQCQKGFKCKFSHD 40 6679**7777.*************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 5.23E-7 | 15 | 40 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.272 | 15 | 42 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.7E-5 | 15 | 41 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.5E-5 | 17 | 40 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-5 | 17 | 40 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 84 aa Download sequence Send to blast |
FKVAISQPKV PVGVDPKSIL CEFFKAGQCQ KGFKCKFSHD LNIQRKGEKI DIYSDKRDED 60 GDMDEWDQET LEKVVESKKN EYNQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa07154s010.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC006569 | 1e-66 | AC006569.5 Arabidopsis thaliana chromosome 2 clone F11A3 map mi148, complete sequence. | |||
GenBank | CP002685 | 1e-66 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006297939.1 | 1e-54 | zinc finger CCCH domain-containing protein 21 | ||||
Refseq | XP_010416033.1 | 2e-54 | PREDICTED: zinc finger CCCH domain-containing protein 21 | ||||
Refseq | XP_010489069.1 | 2e-54 | PREDICTED: zinc finger CCCH domain-containing protein 21 isoform X1 | ||||
Refseq | XP_010489070.1 | 2e-54 | PREDICTED: zinc finger CCCH domain-containing protein 21 isoform X2 | ||||
Refseq | XP_010495923.1 | 6e-55 | PREDICTED: zinc finger CCCH domain-containing protein 21-like | ||||
Refseq | XP_022564145.1 | 9e-56 | zinc finger CCCH domain-containing protein 21-like | ||||
Refseq | XP_022564146.1 | 9e-56 | zinc finger CCCH domain-containing protein 21-like | ||||
Swissprot | Q9SK74 | 5e-55 | C3H21_ARATH; Zinc finger CCCH domain-containing protein 21 | ||||
TrEMBL | R0G5K7 | 3e-53 | R0G5K7_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.0338s0020.1.p | 5e-54 | (Capsella grandiflora) | ||||
STRING | XP_006297939.1 | 5e-54 | (Capsella rubella) | ||||
STRING | XP_010416033.1 | 6e-54 | (Camelina sativa) | ||||
STRING | XP_010489070.1 | 6e-54 | (Camelina sativa) | ||||
STRING | XP_010495923.1 | 2e-54 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM32303 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20280.1 | 2e-57 | C3H family protein |