PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa06g054400.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | DBB | ||||||||
Protein Properties | Length: 257aa MW: 28350 Da PI: 5.1561 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 18.4 | 4.6e-06 | 12 | 42 | 4 | 34 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeH 34 r C+ +++ + +C+ ++ lC C + H Csa06g054400.2 12 RLCDYCDSSVALVYCKADSAKLCLACDKQVH 42 68**************************999 PP | |||||||
2 | zf-B_box | 20 | 1.4e-06 | 55 | 97 | 4 | 41 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg.....Htvvp 41 C+ +++ + +lfCe+ + lC++C ++H H+++p Csa06g054400.2 55 LLCDSCHDSPSSLFCETERFVLCQNCDWQHHTAsstslHSRRP 97 57**************************977447777777665 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 3.0E-14 | 9 | 56 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.485 | 9 | 56 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.75E-5 | 12 | 56 | No hit | No description |
PROSITE profile | PS50119 | 9.769 | 52 | 98 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.44E-7 | 56 | 97 | No hit | No description |
SMART | SM00336 | 0.92 | 57 | 98 | IPR000315 | B-box-type zinc finger |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 257 aa Download sequence Send to blast |
MMEKEEEEGH RRLCDYCDSS VALVYCKADS AKLCLACDKQ VHVANQLFGK HFRSLLCDSC 60 HDSPSSLFCE TERFVLCQNC DWQHHTASST SLHSRRPFEG FTGCPSVPEL LSIVGLDDLS 120 PDSGLLWDQT PPEIISLNDL LVSGGSDTHN FRATDVPPLP KNRHATCGKY KDEMIRQLRG 180 RARSEPSCLK FEAASDAEID AGFQFLAPDL FPTCELVRLS SSSSSSCGCC LLSVDLSTQM 240 STLVKGEWNE MVRSAR* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa06g054400.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB493598 | 0.0 | AB493598.1 Arabidopsis thaliana At2g47890 mRNA for hypothetical protein, partial cds, clone: RAAt2g47890. | |||
GenBank | BT023413 | 0.0 | BT023413.1 Arabidopsis thaliana At2g47890 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010518506.2 | 1e-158 | PREDICTED: zinc finger protein CONSTANS-LIKE 13 | ||||
Swissprot | O82256 | 1e-132 | COL13_ARATH; Zinc finger protein CONSTANS-LIKE 13 | ||||
TrEMBL | R0FWW4 | 1e-132 | R0FWW4_9BRAS; Uncharacterized protein | ||||
STRING | XP_010518506.1 | 1e-159 | (Camelina sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G47890.2 | 1e-124 | B-box type zinc finger protein with CCT domain |
Publications ? help Back to Top | |||
---|---|---|---|
|