PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g051510.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 338aa    MW: 38609.3 Da    PI: 5.8381
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g051510.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.0012426123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y C  C ksF +   L  H+r+H
  Csa06g051510.1  4 YNCRFCFKSFINGRALGGHMRSH 26
                    89********************9 PP
2zf-C2H2140.00015210232123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC+ Cgk F++   L  H  +H
  Csa06g051510.1 210 FKCETCGKEFKSYQALGGHRASH 232
                     89***********9999998887 PP
3zf-C2H211.90.0007262284123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++Cp+C ++F++   L  H r+H
  Csa06g051510.1 262 HECPICFRVFTSGQALGGHKRSH 284
                     79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.26E-8326No hitNo description
PfamPF139127.0E-4327IPR007087Zinc finger, C2H2
PROSITE profilePS501579.764434IPR007087Zinc finger, C2H2
SMARTSM003550.15426IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576672.26E-8205232No hitNo description
PfamPF139126.8E-11209234IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.655210237IPR007087Zinc finger, C2H2
SMARTSM003550.024210232IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280212232IPR007087Zinc finger, C2H2
PfamPF139124.8E-11261284IPR007087Zinc finger, C2H2
PROSITE profilePS501579.182262284IPR007087Zinc finger, C2H2
SMARTSM003550.15262284IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280264284IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MERYNCRFCF KSFINGRALG GHMRSHMLTL SEKPELYELT GEQQEEERPS QLSAHDTESD  60
DASSSSDEFD HLKRNRSTHD DGLEFDFAED DDVESETESS RINPTRRRSK RTRKLGSFDF  120
DDFKKLETSQ PGELVVTEPE HHNHSSASDT TTEEDLAFCL IMLSRDKWKQ HKKRKKTKTR  180
VEEEDDDESD HECEDYKSSK NRGGGGRGRF KCETCGKEFK SYQALGGHRA SHKKNKACTT  240
KTEQAKTEYV HGGVIITEKR VHECPICFRV FTSGQALGGH KRSHGSSIGP GRLNVNQIVR  300
IHREEEEEEV SMKQGTIDLN LPAPNEEDET SLVFDEW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1164175RDKWKQHKKRKK
2171175KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g051510.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010518124.10.0PREDICTED: zinc finger protein ZAT4-like
SwissprotQ9SHD01e-143ZAT4_ARATH; Zinc finger protein ZAT4
TrEMBLR0FXI71e-152R0FXI7_9BRAS; Uncharacterized protein
STRINGXP_010518124.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14652893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.11e-115C2H2-like zinc finger protein