PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g051280.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 271aa    MW: 31433.7 Da    PI: 7.1992
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g051280.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.83.9e-13221051197
                     HHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3  11 lksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                     ++++++ lp  f++++ +  + ++++t+++ +sg+ W+++++ ++ s++++l++GWk+ vk+ ++ e  f+vF++dg++ f  ++ v+
  Csa06g051280.1  22 FTEDNMNLP--FVSDNTSGMHLPQKVTVKSvSSGNIWRMEMTTNGESDAVFLRDGWKKIVKDENITEPVFLVFEFDGSRLF--HFCVY 105
                     455555554..88888555568899*****9999*******99*******************************9986666..66655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.4E-1213107IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.28E-1413107IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.0E-914108IPR003340B3 DNA binding domain
PROSITE profilePS5086310.34814108IPR003340B3 DNA binding domain
CDDcd100178.88E-814105No hitNo description
PfamPF023627.9E-1025104IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.4E-7173268IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.08E-8174254IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MKTQGSNGDL IQKFFRVYIP NFTEDNMNLP FVSDNTSGMH LPQKVTVKSV SSGNIWRMEM  60
TTNGESDAVF LRDGWKKIVK DENITEPVFL VFEFDGSRLF HFCVYEHSSM CKRTRSPMEK  120
EVIDVESEEE TEDDDESTKE FDESPRRKER GGTSRQRLKT DSHKVDEYLD DELNPSFPVD  180
MTQSRSTRIP SLLIKDYNLT FPNLVTVRDK NGKLKRKILV WKNKSVYLSG LRSFIRRNHV  240
KKGDKMFCEL KMVDGYQGLV HEIKVHIIEG *
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g051280.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019082402.10.0PREDICTED: B3 domain-containing protein REM22-like
SwissprotQ9STF11e-131REM22_ARATH; B3 domain-containing protein REM22
TrEMBLR0FY441e-143R0FY44_9BRAS; Uncharacterized protein
STRINGXP_010518098.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16649810
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46770.11e-119B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]