PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g051080.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Trihelix
Protein Properties Length: 395aa    MW: 42886.2 Da    PI: 9.633
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g051080.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix66.94.1e-2172163187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqlea 87 
                     +W+ +e+ aLi+++r+++ +l+rg+lk+++Weev++++     +   +++++qC++k+e+l+kry+ + +++++   ++  s++++f+++ea
  Csa06g051080.1  72 CWSLEETVALIDGYRDKWYALNRGNLKANHWEEVADAVgtscPDVTPKKTAVQCRHKMEKLRKRYRTEIQRARSVpVARFISSWVHFKRMEA 163
                     7************************************9998888899***************************977999**********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.2E-1971164No hitNo description
PROSITE profilePS500906.12173133IPR017877Myb-like domain
SMARTSM005956.8E-1580169IPR006578MADF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MSDPDSPMNH DPIPDPSPVR IQSSPPSALV PPSLSSPAQD DASAEPVSVT DLKSASIPSA  60
ASKNSRRLPP PCWSLEETVA LIDGYRDKWY ALNRGNLKAN HWEEVADAVG TSCPDVTPKK  120
TAVQCRHKME KLRKRYRTEI QRARSVPVAR FISSWVHFKR MEAMENRPEI KQGNESGDDE  180
DHDDGNYTAR YQFKNGGGGG GGGGSVARTT PGFFNRNGTA GSGTSSGGIR IRIPTGVSLA  240
QPGPRFPGKI DQKYTASPSS NPRPGRGLGV GAGGGSSYSA RVGRIPEGGG GKRGREMMMM  300
MKTEEDDGNG NDPMVEIASA IKLLGDTMLR TEQTRMEMTR EIEAMRMDTE MKRTKMILES  360
QQRIVESFAK TIAENTEEKM KRKARRMAAA DSLD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g051080.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010518077.10.0PREDICTED: trihelix transcription factor ASIL2-like
TrEMBLR0FV430.0R0FV43_9BRAS; Uncharacterized protein
STRINGXP_010518077.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM89632534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.11e-161Trihelix family protein