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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa06g049730.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | Nin-like | ||||||||
Protein Properties | Length: 960aa MW: 105902 Da PI: 5.344 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 89.4 | 2.8e-28 | 612 | 662 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl+ l+++Fs+++kdAAk+Lgvc+T+LKriCRq+GI+RWP+Rki+++ Csa06g049730.1 612 EKNVSLSILQQHFSGSLKDAAKSLGVCPTTLKRICRQHGIMRWPSRKINKV 662 89***********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 16.699 | 601 | 682 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 2.7E-27 | 614 | 662 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 3.14E-23 | 848 | 945 | No hit | No description |
Gene3D | G3DSA:3.10.20.240 | 9.7E-23 | 857 | 938 | No hit | No description |
PROSITE profile | PS51745 | 22.773 | 859 | 941 | IPR000270 | PB1 domain |
SMART | SM00666 | 2.1E-23 | 859 | 941 | IPR000270 | PB1 domain |
CDD | cd06407 | 4.45E-38 | 860 | 940 | No hit | No description |
Pfam | PF00564 | 9.4E-18 | 862 | 940 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 960 aa Download sequence Send to blast |
MENPFASREK GFGYQDVPTE QMDGFSTSFG SGVRSLIPDD LLNSSSELLN FDSFAAWCNT 60 PSAADIFFSQ YGLLNSQPMP FGAFTSFHAA DFPKATSLTR SFHDLETSYF GEETSLVPEM 120 SSLLHRSLDN DVLSGKRRRV NNNQKIGFPD VLNCTIPRSL SHSLDEKMLK ALSLFMESSG 180 SGEGILAQVW TPIKIGDQYV LSTCDQAYLL DPRLSQYREV SRKFTFAAEA NQRSFPGLPG 240 RVFISGVPEW TSNVMYYKTD EYLRMKHAID NEVRGSIAIP VLEASGTSCC AVMEFVTSKQ 300 KPNFHMEMDS VCRALQSSAF VNESFPGSSG DSLLWLQPEA VNLRTSTIPR PQYLSNNQRV 360 ALAEIQDVLR AVSHAHKLPL ALAWIPCRKD QSIRVPGPNS GEKCVLCIEE TACYVNDMEM 420 EGFVHACLEH CLREKEGIVG KAFISNQPFF SSDVKAYDIS EYPLVQHARK YGLNAAVAIK 480 LRSTYTGEDD YILELFLPVS MKGSSEQQLL LDSLSGTMQR ICRTLRTVSE VGSTKKEVTN 540 PGIQSGEMSN FPQTTCLANL QTTSLDSEYN STRSIFSGMS SDKDNGITVS QGILEQDISK 600 ARTPEKKKST TEKNVSLSIL QQHFSGSLKD AAKSLGVCPT TLKRICRQHG IMRWPSRKIN 660 KVNRSLRKIQ TVLDSVQGVE GGLKFDSATG EFIAVGPFIQ EFDTQKGLLS HINDTHARKS 720 QEDMTDDTSF KLQEGKSVDN AVKLEEDITM NHESPGSFME VNASGQPWDW MVEQSGLNGS 780 EGINSVCNLI SLAISDGMDP TTRYSGSIVE PNHSLSCSIS DSSNGSGAVM RGSSSTSVED 840 WNQMRSHNNN SGGESGSTTL IVKATYREDT VRFKFEPSVG CSQLYKEVGK RFKLQDGSFQ 900 LKYLDDEEEW VMLVTDSDLQ ECLEILYGLG KHSVKFMVRD LPPPIGSSAG SNGYLGTCL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 135 | 139 | KRRRV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa06g049730.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC002335 | 0.0 | AC002335.3 Arabidopsis thaliana chromosome 2 clone T1O24 map CIC10F02, complete sequence. | |||
GenBank | AY102562 | 0.0 | AY102562.1 Arabidopsis thaliana hypothetical protein (At2g43500/T1O24.24) mRNA, complete cds. | |||
GenBank | AY102563 | 0.0 | AY102563.1 Arabidopsis thaliana hypothetical protein (At2g43500/T1O24.24) mRNA, complete cds. | |||
GenBank | AY649251 | 0.0 | AY649251.1 Arabidopsis thaliana hypothetical protein (At2g43500) gene, complete cds. | |||
GenBank | CP002685 | 0.0 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019082368.1 | 0.0 | PREDICTED: protein NLP8-like isoform X4 | ||||
Swissprot | O22864 | 0.0 | NLP8_ARATH; Protein NLP8 | ||||
TrEMBL | R0FUG6 | 0.0 | R0FUG6_9BRAS; Uncharacterized protein | ||||
STRING | XP_010517916.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2299 | 27 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43500.2 | 0.0 | Nin-like family protein |
Publications ? help Back to Top | |||
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