PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa06g047930.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

C2H2

Protein Properties

Length: 471aa MW: 54294.1 Da PI: 8.1558

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa06g047930.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.4	0.00011	100	122	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F+++ L H++ H Csa06g047930.1 100 FECHYCFRNFPTSQALGGHQNAH 122 89******************988 PP
2	zf-C2H2	14.4	0.00011	272	294	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F+++ L H++ H Csa06g047930.1 272 FECHYCFRNFPTSQALGGHQNAH 294 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.89E-5	96	128	No hit	No description
Pfam	PF13912	4.4E-5	99	124	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.99	100	127	IPR007087	Zinc finger, C2H2
SMART	SM00355	4.3	100	122	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	102	122	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	4.89E-5	268	300	No hit	No description
Pfam	PF13912	4.4E-5	271	296	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.99	272	299	IPR007087	Zinc finger, C2H2
SMART	SM00355	4.3	272	294	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	274	294	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 471 aa Download sequence Send to blast
MEETNGRRET HDFMNVNVES FSQLPFIRRT PPKEKAAIIR LFGQELVGDN SKNISADSSD 60 QTSTKNDESS ENIKVKEKDK DKEKDRDKDK DKDNNNNRRF ECHYCFRNFP TSQALGGHQN 120 AHKRERQHAK RGSMTSYLHH HHQPDPHHVY GFLNSHHHRH YPSWTSEPRY YGGGGHQTSS 180 ETHDFMNVNV ESFSQLPFIR RTPPKEKAAI IRLFGQELVG DNSENISADS SDQTSTKNDE 240 SSENIKDKEK DKDKEKDRDK DKDKDNNNNR RFECHYCFRN FPTSQALGGH QNAHKRERQH 300 AKRGSMTSYL HHHHQPDPHH VYGFLNSHHH RHYPSWTSEP RYYGGGGHQT SSYYSRSTIP 360 PPPYSNIPPT INGSPLGLWR VPPSTSANTI HGVYSASPAS VFRTHEQETS KEPHWPYRLM 420 KPNVQDHATK KAQGWVNADV DDDSVTVGIT EDNGQDKRGE REGELRSEIK V

Sequence ? help Back to Top

Protein Sequence Length: 471 aa Download sequence Send to blast

MEETNGRRET HDFMNVNVES FSQLPFIRRT PPKEKAAIIR LFGQELVGDN SKNISADSSD  60
QTSTKNDESS ENIKVKEKDK DKEKDRDKDK DKDNNNNRRF ECHYCFRNFP TSQALGGHQN  120
AHKRERQHAK RGSMTSYLHH HHQPDPHHVY GFLNSHHHRH YPSWTSEPRY YGGGGHQTSS  180
ETHDFMNVNV ESFSQLPFIR RTPPKEKAAI IRLFGQELVG DNSENISADS SDQTSTKNDE  240
SSENIKDKEK DKDKEKDRDK DKDKDNNNNR RFECHYCFRN FPTSQALGGH QNAHKRERQH  300
AKRGSMTSYL HHHHQPDPHH VYGFLNSHHH RHYPSWTSEP RYYGGGGHQT SSYYSRSTIP  360
PPPYSNIPPT INGSPLGLWR VPPSTSANTI HGVYSASPAS VFRTHEQETS KEPHWPYRLM  420
KPNVQDHATK KAQGWVNADV DDDSVTVGIT EDNGQDKRGE REGELRSEIK V

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor required for the initiation of inflorescence trichomes in response to gibberellin and cytokinin. Is not involved in the regulation of trichome branching. Is functionally equivalent to GIS2 (PubMed:17507408). Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development (PubMed:24808098). {ECO:0000269\|PubMed:17507408, ECO:0000269\|PubMed:24808098}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa06g047930.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By gibberellin. {ECO:0000269\|PubMed:17507408}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY039597	0.0	AY039597.1 Arabidopsis thaliana At2g41940/T6D20.16 mRNA, complete cds.
GenBank	AY056093	0.0	AY056093.1 Arabidopsis thaliana At2g41940/T6D20.16 mRNA, complete cds.
GenBank	CP002685	0.0	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
GenBank	U90439	0.0	U90439.3 Arabidopsis thaliana chromosome 2 BAC T6D20 genomic sequence, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010517701.1	1e-140	PREDICTED: zinc finger protein 8-like isoform X1
Refseq	XP_019082325.1	1e-140	PREDICTED: zinc finger protein 8-like isoform X2
Swissprot	P93751	1e-128	ZFP8_ARATH; Zinc finger protein 8
TrEMBL	A0A1J3G853	1e-128	A0A1J3G853_NOCCA; Zinc finger protein 8 (Fragment)
TrEMBL	A0A1J3ICW3	1e-128	A0A1J3ICW3_NOCCA; Zinc finger protein 8 (Fragment)
STRING	Cagra.13389s0009.1.p	1e-148	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2495	19	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41940.1	1e-119	zinc finger protein 8

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Joseph MP, et al. The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development. Plant Physiol., 2014. 165(3): p. 1203-1220 [PMID:24808098] Sun L, et al. GLABROUS INFLORESCENCE STEMS3 (GIS3) regulates trichome initiation and development in Arabidopsis. New Phytol., 2015. 206(1): p. 220-30 [PMID:25640859] Kim SY,Hyoung S,So WM,Shin JS The novel transcription factor TRP interacts with ZFP5, a trichome initiation-related transcription factor, and negatively regulates trichome initiation through gibberellic acid signaling. Plant Mol. Biol., 2018. 96(3): p. 315-326 [PMID:29335898]